RNA id: TU53749


Basic Information

Item Value
RNA id TU53749
length 1686
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G39846
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1928950 ~ 1970208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaatacttcatggtattttcgcaataacgatactcttgttaatatgacaaaacacttaattaaataaaaaaaaaacactactgcaacaaaagaaaaatttaatgttattattttatacgatatgatatggcacacctctaactgaaatattaaaaatacaagaattttataagatttgtaatagaaatcgtcagtcaatgatccagaacgtcaggatactaataataatgcactccaaatatctccatatatccagaattaaaaacagtaaaaagcagTACCCTGATGCGATattttttagggtataatattgtttatgatATTCAAacatgttggcgatattattgtgtacaatacgatatggaacacccctagtgtgtgtgtgtgtaagtctgtgtgtgttagtctgtgtgttttagtCTGTGTGTCATTACTGTGtgcgttagtgtgtgtgtgtgttggaactGTCATGTTGGAATGTTGGAAGGTCACTCATTGCAGTAATTGGCTGCTGTTGGTTCAGTGGGCTACTCAGCTAAACGGCtgtggtggagatggaggagccTTCCCTCCTCGTGATCCTAAGGTGACATGACATCTcggtacacatacacacacacacacacacacacacacacacacacaaacacacacaccacaatggATCTTATTGTGTTTGAGAGAGTCACAGGCTGTGGTACTGTTTGTTCTGTGCTGATGTCATTTAGGATCGTGTTGATTGCAGGGGTTTGCAGTGTATAATTAGGACTTGTTCATTTAGGccacctttaaaaataaaagagagtacacctttaaaaataaaggtgtaaCAAAGGAGCTtcacagaagaaccacttttggttttaTTAAAATCCGACATTCTGCACGCACACGTCTTCTGTGTCTTAATTCTTTTTACTCAATAAACGCTCTGTAGCACCTTTAGTTCTGTGTGTAACTTTACATTGGATACATGAAGACACCAAAGCATTTCTCAAAAGTAAAGCCATTACAGGTCTAGAGCCTCTGCTGTTGTGTAGCTCTGCCCGTCTTCTAATGTTTCAAAACCAAAACAACCTTATTTTTTGTCCTCTAAACTGTCTGTCTTTCCATCTTCAGTGTTTAGTTTCTAAACCAGATTCTGCTTTATTGAATGAAAGTGAGCCTACACTTAGGAATGTGGTTGACAGCATTGGTTTTgtttacaatattaataaagtgATAAATAGCTGTTTTTTGAGATGTTTGTTGGATTAGATTTTACATTtcctaataatttaattttgaaatACATCTGTTTTGAAACCATATATGGTGTTACATCAGAAATAGACCcaatgcatatttttgttttgacaCATTTTTGCACTGCAGTGCTTTATATGACCcgtgtttacatttacatttacttatCCAGAgagacttacaacagtgctttgtcgtttacttcaaaatattcatagctagtttgtagagactaggatcaagagatacaagctttgataatgtttaaaactttaaaattttgctaggaatttaaaatatacagaggCCTTTACTTAGCATTATGGTAAAACAGTGTGTTCAgcatcaggcagtgtatttctaaacatttggtgtaaaagttaattctaccagtcaggttgtaaagagcagtaaagccactttgctgaactacagagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53740 lncRNA upstream 37810 1857336 ~ 1891140 (+) True G39838
TU53702 lncRNA upstream 87301 1839503 ~ 1841649 (+) True G39825
XR_002649919.1 lncRNA upstream 122009 1803667 ~ 1806941 (+) True LOC111192496
XR_002649916.1 lncRNA upstream 201295 1727164 ~ 1727655 (+) True LOC111192493
TU53682 lncRNA upstream 207020 1719869 ~ 1721930 (+) True G39816
TU53868 lncRNA downstream 51975 2022183 ~ 2022598 (+) True G39914
TU53876 lncRNA downstream 99891 2070099 ~ 2078006 (+) True G39922
TU53882 lncRNA downstream 158702 2128910 ~ 2131518 (+) False G39927
TU53881 lncRNA downstream 159057 2129265 ~ 2131518 (+) True G39927
TU53883 lncRNA downstream 160766 2130974 ~ 2131935 (+) True G39928
XM_007236235.3 mRNA upstream 57020 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA upstream 57020 1866416 ~ 1871930 (+) True slc35c1
XM_022670138.1 mRNA upstream 92566 1809602 ~ 1836384 (+) True LOC103030943
XM_022670136.1 mRNA upstream 134018 1761227 ~ 1794932 (+) True muc2
XM_007260240.2 mRNA upstream 222952 1700837 ~ 1705998 (+) True rplp2
XM_022669490.1 mRNA downstream 148435 2118643 ~ 2235758 (+) True LOC111192498
XM_007238866.3 mRNA downstream 411845 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA downstream 411853 2382061 ~ 2388088 (+) True LOC103031990
XM_007238867.3 mRNA downstream 421907 2392115 ~ 2406388 (+) True LOC103032316
XM_022670140.1 mRNA downstream 627484 2597692 ~ 2738656 (+) True LOC103029230
TU53708 other upstream 142429 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 142714 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 143857 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 144606 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 146290 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 719759 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 765388 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 2164302 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3338338 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4563157 6533365 ~ 6533674 (+) True G40756

Expression Profile