RNA id: TU53750


Basic Information

Item Value
RNA id TU53750
length 841
lncRNA type intronic
GC content 0.42
exon number 2
gene id G39847
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1931193 ~ 1932060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATCTAAAAAATAGGGtattttttctcactttctcagTTTTAGTGAAGTCTGGTGAAATTCTTGTATAGAAATAGACGGAGAAACCTCCGGCAATAACCCAGTCCGTCTGGTACTGTCTTAAGAGCACTCAGTGACCTGCTGAGGAATTATAAACAACCTAATTACAGCAGTGAACAGTATGCATTGTTCTGAATGAAACAGACTCAGGGTAGGTAGGGTAGTTTTAGGTTGTGAGCTGAACAGTCATAAAGCGTCTACCTTGAGACGTCTGAAACAGAAGCCAAGTGTGCTAATCTGTCTAATAACCTGTGAAATAATAATTAGACTAGACTGGTTAAATTGGGCTGAATAATagtctttattatattttacacagacaGAAAAGCTTTTAGCTCGCACAcctgttacagtgtgtgtgtgtgtgcgtgcatgatGACGCTAAAGTTGCCTCGTTGTCACACACCCACACGAATCACTTTTCAACGTCAAAGATACTGTTGCCATGGGGATGGACCACAGTCTCCATCACTGATGGCACCAATCAGAGTGAGTCAGCTCAGAGTGAGGGGGCAGgcgcacacatatatacacacacacacacacacacacacacactaaccctaTCCTGTGACTGGAGTGAACTATTACCATAATcaacatatcatatcaaaccaTAAACCTAtttaatctaaccagcacagcaccatccatctgttatcaaaccccagatcctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagatcctactaa

Function

GO: NA

KEGG:

id description
ko04022 cGMP-PKG signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53740 lncRNA upstream 40053 1857336 ~ 1891140 (+) True G39838
TU53702 lncRNA upstream 89544 1839503 ~ 1841649 (+) True G39825
XR_002649919.1 lncRNA upstream 124252 1803667 ~ 1806941 (+) True LOC111192496
XR_002649916.1 lncRNA upstream 203538 1727164 ~ 1727655 (+) True LOC111192493
TU53682 lncRNA upstream 209263 1719869 ~ 1721930 (+) True G39816
TU53751 lncRNA downstream 86 1932146 ~ 1932812 (+) True G39848
TU53868 lncRNA downstream 90123 2022183 ~ 2022598 (+) True G39914
TU53876 lncRNA downstream 138039 2070099 ~ 2078006 (+) True G39922
TU53882 lncRNA downstream 196850 2128910 ~ 2131518 (+) False G39927
TU53881 lncRNA downstream 197205 2129265 ~ 2131518 (+) True G39927
XM_007236235.3 mRNA upstream 59263 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA upstream 59263 1866416 ~ 1871930 (+) True slc35c1
XM_022670138.1 mRNA upstream 94809 1809602 ~ 1836384 (+) True LOC103030943
XM_022670136.1 mRNA upstream 136261 1761227 ~ 1794932 (+) True muc2
XM_007260240.2 mRNA upstream 225195 1700837 ~ 1705998 (+) True rplp2
XM_022669490.1 mRNA downstream 186583 2118643 ~ 2235758 (+) True LOC111192498
XM_007238866.3 mRNA downstream 449993 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA downstream 450001 2382061 ~ 2388088 (+) True LOC103031990
XM_007238867.3 mRNA downstream 460055 2392115 ~ 2406388 (+) True LOC103032316
XM_022670140.1 mRNA downstream 665632 2597692 ~ 2738656 (+) True LOC103029230
TU53708 other upstream 144672 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 144957 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 146100 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 146849 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 148533 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 757907 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 803536 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 2202450 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3376486 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4601305 6533365 ~ 6533674 (+) True G40756

Expression Profile