RNA id: TU53868


Basic Information

Item Value
RNA id TU53868
length 416
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G39914
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2022183 ~ 2022598 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACGGTGgtgcagtgggtagcacttccgcctcacagcaagacggcctgggttcgattcccggctggggtgtcccaggtctttctgtgtggagtttgcacgttctccccgtgtctgcgtgggtttcctccgggttctccggtttcctcccacaggccaaagacggcacgttcaggctaattggatcttgattgaaattgccccttaggtgtgagtgtgtgagtgtgtgagtgtgtgagtgaatgtgtctgtgtgtctgtctgtgtctgtctgccctgcgatggattggcggcctgtccagggtgtatcctgccttccgcccgatgcctgctgggataggctccagcacccccccgcgacccttcacggataaagcggttgacaatgagatgagatgaggtgATTTCCTACAGGAtac

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03430 Mismatch repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53749 lncRNA upstream 51975 1928950 ~ 1970208 (+) True G39846
TU53704 lncRNA upstream 69277 1910966 ~ 1952906 (+) True G39826
TU53751 lncRNA upstream 89371 1932146 ~ 1932812 (+) True G39848
TU53750 lncRNA upstream 90123 1931193 ~ 1932060 (+) True G39847
TU53740 lncRNA upstream 131043 1857336 ~ 1891140 (+) True G39838
TU53876 lncRNA downstream 47501 2070099 ~ 2078006 (+) True G39922
TU53882 lncRNA downstream 106312 2128910 ~ 2131518 (+) False G39927
TU53881 lncRNA downstream 106667 2129265 ~ 2131518 (+) True G39927
TU53883 lncRNA downstream 108376 2130974 ~ 2131935 (+) True G39928
TU53884 lncRNA downstream 181925 2204523 ~ 2204958 (+) True G39929
XM_022669489.1 mRNA upstream 73761 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA upstream 73761 1898928 ~ 1948422 (+) True mapk8ip1
XM_007236235.3 mRNA upstream 150253 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA upstream 150253 1866416 ~ 1871930 (+) True slc35c1
XM_022670138.1 mRNA upstream 185799 1809602 ~ 1836384 (+) True LOC103030943
XM_022669490.1 mRNA downstream 96045 2118643 ~ 2235758 (+) True LOC111192498
XM_007238866.3 mRNA downstream 359455 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA downstream 359463 2382061 ~ 2388088 (+) True LOC103031990
XM_007238867.3 mRNA downstream 369517 2392115 ~ 2406388 (+) True LOC103032316
XM_022670140.1 mRNA downstream 575094 2597692 ~ 2738656 (+) True LOC103029230
TU53708 other upstream 235662 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 235947 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 237090 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 237839 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 239523 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 667369 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 712998 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 2111912 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3285948 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4510767 6533365 ~ 6533674 (+) True G40756

Expression Profile