RNA id: TU53883


Basic Information

Item Value
RNA id TU53883
length 224
lncRNA type intronic
GC content 0.45
exon number 2
gene id G39928
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2130974 ~ 2131935 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAGCTTAGATCATCCGAAACCAGTTTAGATCATCCGAATCCAGCTTAGATCATCCGAATCCAGCTTAGATCATCCGAATCCAGCTTAGATCATCCGAAAACAACCTTAGACcatccgaaaccagcttagatcatccgaaaccagcttagaccatcccAAAAAACAACCTTAGACCATCCGAAACCAGTTTAGACCATCCGAAACCAGCTTAGACCAACCgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53876 lncRNA upstream 52968 2070099 ~ 2078006 (+) True G39922
TU53868 lncRNA upstream 108376 2022183 ~ 2022598 (+) True G39914
TU53749 lncRNA upstream 160766 1928950 ~ 1970208 (+) True G39846
TU53884 lncRNA downstream 72588 2204523 ~ 2204958 (+) True G39929
TU53885 lncRNA downstream 84033 2215968 ~ 2216663 (+) True G39930
TU53899 lncRNA downstream 245571 2377506 ~ 2377822 (+) True G39942
TU53904 lncRNA downstream 257103 2389038 ~ 2390639 (+) True G39945
TU53905 lncRNA downstream 257103 2389038 ~ 2389322 (+) False G39945
XM_022669489.1 mRNA upstream 182552 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA upstream 182552 1898928 ~ 1948422 (+) True mapk8ip1
XM_007236235.3 mRNA upstream 259044 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA upstream 259044 1866416 ~ 1871930 (+) True slc35c1
XM_022670138.1 mRNA upstream 294590 1809602 ~ 1836384 (+) True LOC103030943
XM_007238866.3 mRNA downstream 250118 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA downstream 250126 2382061 ~ 2388088 (+) True LOC103031990
XM_007238867.3 mRNA downstream 260180 2392115 ~ 2406388 (+) True LOC103032316
XM_022670140.1 mRNA downstream 465757 2597692 ~ 2738656 (+) True LOC103029230
XM_007237229.3 mRNA downstream 669083 2801018 ~ 2861383 (+) True kiaa1024
TU53708 other upstream 344453 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 344738 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 345881 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 346630 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 348314 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 558032 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 603661 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 2002575 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3176611 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4401430 6533365 ~ 6533674 (+) True G40756

Expression Profile