RNA id: TU53902


Basic Information

Item Value
RNA id TU53902
length 467
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G39943
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2419150 ~ 2425105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgTGTAACACCAGCTCTCTGCCACAGGTCCTGATGTCATCTCCcccgggggagggggggtggggaCCCGCGACATGGCCAGCTTTATCCCCTCTGACCTCCCTTATGAAGCTCGAcCTTATGTGTGGAAACGGGGAGATCACTCATGCCATTCCTAACAGCATATTAATAAACCGGCGCGCTGCTCACAGTCAccagatagcacctcacagCACGCTGAGCTCCGCCTCCTCACGGCCcatcctCTCTCAGTCAGTCCTCACAGCCCCGCACACTGAACAGCGGCACTTCTGCCCCAAAACTACAGCTTTAAAATAACTCTACTGCGCCGAAACTGCGAACTTTTAGCTCCTTTTAGGGAGAAGTGCTGCCTTTCTAAACAGCTTAGCCTGAGCGGCTAACGATGCCCGACTGCTGAATGAATCAATCCGCTGATTCGGTTCTTTTTTCCGCGCGCTGGAGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53913 lncRNA upstream 94 2414772 ~ 2419056 (+) True G39952
TU53906 lncRNA upstream 27588 2389916 ~ 2391562 (+) True G39946
TU53904 lncRNA upstream 28511 2389038 ~ 2390639 (+) True G39945
TU53905 lncRNA upstream 29828 2389038 ~ 2389322 (+) False G39945
TU53899 lncRNA upstream 41328 2377506 ~ 2377822 (+) True G39942
TU53934 lncRNA downstream 73764 2498869 ~ 2499291 (+) True G39965
TU53999 lncRNA downstream 367429 2792534 ~ 2793711 (+) False LOC111192560
XR_002650014.1 lncRNA downstream 367435 2792540 ~ 2793815 (+) True LOC111192560
TU54001 lncRNA downstream 382045 2807150 ~ 2810533 (+) True G40014
TU54005 lncRNA downstream 407600 2832705 ~ 2835026 (+) True G40018
XM_007238867.3 mRNA upstream 12762 2392115 ~ 2406388 (+) True LOC103032316
XM_007238866.3 mRNA upstream 31062 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 31062 2382061 ~ 2388088 (+) True LOC103031990
XM_022669490.1 mRNA upstream 183392 2118643 ~ 2235758 (+) True LOC111192498
XM_007236233.3 mRNA upstream 470728 1898928 ~ 1948422 (+) True mapk8ip1
XM_022670140.1 mRNA downstream 172587 2597692 ~ 2738656 (+) True LOC103029230
XM_007237229.3 mRNA downstream 375913 2801018 ~ 2861383 (+) True kiaa1024
XM_022669496.1 mRNA downstream 561260 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA downstream 561261 2986366 ~ 3006325 (+) False zfand6
XM_015608092.2 mRNA downstream 561263 2986368 ~ 3006325 (+) False zfand6
TU53708 other upstream 632629 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 632914 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 634057 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 634806 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 636490 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 264862 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 310491 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 1709405 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2883441 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4108260 6533365 ~ 6533674 (+) True G40756

Expression Profile