RNA id: TU53934


Basic Information

Item Value
RNA id TU53934
length 246
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G39965
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2498869 ~ 2499291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagagtaccgtatttttcggactataaggcgcacttaaaaacttttaattttcacaaaaattgacagtgcgtcttataatacggtgcgccttttgtatggattttactcgtcaggttgtaaggagcagtaaacacacactccgtgcagcgttatagagagtttcagtgctatacagagtccagagccgtgcagctccgaggctgagcagcaatagcattagctagatgctaaccgctaagctagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53902 lncRNA upstream 73764 2419150 ~ 2425105 (+) True G39943
TU53913 lncRNA upstream 79813 2414772 ~ 2419056 (+) True G39952
TU53906 lncRNA upstream 107307 2389916 ~ 2391562 (+) True G39946
TU53904 lncRNA upstream 108230 2389038 ~ 2390639 (+) True G39945
TU53905 lncRNA upstream 109547 2389038 ~ 2389322 (+) False G39945
TU53999 lncRNA downstream 293243 2792534 ~ 2793711 (+) False LOC111192560
XR_002650014.1 lncRNA downstream 293249 2792540 ~ 2793815 (+) True LOC111192560
TU54001 lncRNA downstream 307859 2807150 ~ 2810533 (+) True G40014
TU54005 lncRNA downstream 333414 2832705 ~ 2835026 (+) True G40018
TU54018 lncRNA downstream 460567 2959858 ~ 3003170 (+) True G40030
XM_007238867.3 mRNA upstream 92481 2392115 ~ 2406388 (+) True LOC103032316
XM_007238866.3 mRNA upstream 110781 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 110781 2382061 ~ 2388088 (+) True LOC103031990
XM_022669490.1 mRNA upstream 263111 2118643 ~ 2235758 (+) True LOC111192498
XM_007236233.3 mRNA upstream 550447 1898928 ~ 1948422 (+) True mapk8ip1
XM_022670140.1 mRNA downstream 98401 2597692 ~ 2738656 (+) True LOC103029230
XM_007237229.3 mRNA downstream 301727 2801018 ~ 2861383 (+) True kiaa1024
XM_022669496.1 mRNA downstream 487074 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA downstream 487075 2986366 ~ 3006325 (+) False zfand6
XM_015608092.2 mRNA downstream 487077 2986368 ~ 3006325 (+) False zfand6
TU53708 other upstream 712348 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 712633 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 713776 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 714525 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 716209 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 190676 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 236305 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 1635219 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2809255 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4034074 6533365 ~ 6533674 (+) True G40756

Expression Profile