RNA id: TU53999


Basic Information

Item Value
RNA id TU53999
length 440
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC111192560
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2792534 ~ 2793815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTACACACTAAAAACTGCTGGGTTATTTTAACTACTCATCTGCTGGGTTATGAAATGTCTAACCCATTATGAGTTATTTTTATGGGAACTGGGTTATTTTTGGGGGGATTTGGGTTGTTTTTGTGCAACTCATGTGCTGGGTCAAAATTTCGCAAAGTTCTTCAACCCAACATGCATCAGTTGACCCAGCAGCTGGGTTGTTTGTGCTTCGACCGTCATCACGTTTACAGGACGTGCTCCTCCTCCACCATTTCGCGCCCAGACAGGCTCCATGCTCCTTCAGCAGCTCGCAGGTGCTCGAGAGAGACTGATCATCTTTGtgCCTGGAACAAATATGGTGGAGCACCTCCATGAGGCCATGGCATCCAGACCTTACCCATGTCCTGACACCGGGAAATGACAATCCTTGCTGGACAGGCTTTGGAattttaatcacaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53934 lncRNA upstream 293243 2498869 ~ 2499291 (+) True G39965
TU53902 lncRNA upstream 367429 2419150 ~ 2425105 (+) True G39943
TU53913 lncRNA upstream 373478 2414772 ~ 2419056 (+) True G39952
TU53906 lncRNA upstream 400972 2389916 ~ 2391562 (+) True G39946
TU53904 lncRNA upstream 401895 2389038 ~ 2390639 (+) True G39945
TU54001 lncRNA downstream 13439 2807150 ~ 2810533 (+) True G40014
TU54005 lncRNA downstream 38994 2832705 ~ 2835026 (+) True G40018
TU54018 lncRNA downstream 166147 2959858 ~ 3003170 (+) True G40030
TU54026 lncRNA downstream 248693 3042404 ~ 3042631 (+) True G40035
TU54110 lncRNA downstream 475544 3269255 ~ 3270205 (+) True G40095
XM_022670140.1 mRNA upstream 53878 2597692 ~ 2738656 (+) True LOC103029230
XM_007238867.3 mRNA upstream 386146 2392115 ~ 2406388 (+) True LOC103032316
XM_007238866.3 mRNA upstream 404446 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 404446 2382061 ~ 2388088 (+) True LOC103031990
XM_022669490.1 mRNA upstream 556776 2118643 ~ 2235758 (+) True LOC111192498
XM_007237229.3 mRNA downstream 7307 2801018 ~ 2861383 (+) True kiaa1024
XM_022669496.1 mRNA downstream 192654 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA downstream 192655 2986366 ~ 3006325 (+) False zfand6
XM_015608092.2 mRNA downstream 192657 2986368 ~ 3006325 (+) False zfand6
XM_022669498.1 mRNA downstream 193428 2987139 ~ 3006325 (+) False zfand6
TU53995 other upstream 54317 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1006013 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1006298 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1007441 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 1008190 1783424 ~ 1784344 (+) False muc2
TU54378 other downstream 1340799 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2514835 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3739654 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 5032812 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 7202042 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile