RNA id: TU54005


Basic Information

Item Value
RNA id TU54005
length 2270
lncRNA type intronic
GC content 0.44
exon number 2
gene id G40018
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2832705 ~ 2835026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGATCAACTATGTGTAGAGGAGCTTTAATGTATCCTGACCCTACACCCTTACATACAGCATATGCACCACAGAATGACTGAGCTGAAAAAGGTAAACAACTGGATAAGATGAGAGACTGTGCCGCCCCAGTATCCCTTAATATACTGACTGAAGCTGCAGCACCACCATGCCCCAAACTGACATTTCCTCTTGACATAAAAGGCTTAAAAGAAGAATCAAACACATTGCATAGGGCAATCAGACAGTCAGTACATTACACAATCCACAAAACCAACACTTTTAGCTGAACCACCAGCTTGCGGCTTATTCGGTCTCTCCAACTTTCTTTTCAGCGCTAAACAGTCACCAGCTATATGGCCAACTTTGTGACAGTAATAACATTCACGGGCACTAAAGGAACGTGGTGGGGAACCACCACCATGAGAATTCTTTACACTACTTCCTGAAGTACTCTCTATCTTAACTACAGGAGACCTAAAGGTTTGCCTGTGCGTGAGTACAAACTCATCAGCCTGCACGGCTGCTTGGGACACACTAACAGCAGAGCGTTCATTCAAATAAGTCACAACACGTTCTGGCAAACAGTTCTTGAACTCTTCTAAAAGAATAAGTTCACGGAGCGACTCAAAATCATTCACCTTATTTGCGCTACACCACTTATCAAAAAGAACTCCTTTCTCCCTCACAAACTCAACGTGAGTTTGGGCTGACTGCTTCCTTAGATTCCTAAACCGCTGACGGTATGCTTCTGGCACTAACTCATAAGCGCGTAAAATAGCAGACTTAACAACATCATATTGCAAGCTATCCTGAAGTGATAAAGCAGAACACACTTCCTGTGCCTTGCCCACTAGCTTACATTGCAAAAGAACAGGCCAGATATCCTTTGGCCAAGCCAAAGTTGCTGCTAATCTTTCAAACACGCTAAAATAGGTGTCCACTTCAGCTTCTCTAAACACAGGCACCAAAGAGATATATTTAGACACGTCACAGGAGGAAGTGTGAGGCACAACTGGGACAACTACTGGCGACTCAGACCCACCACTAGATGGCACTGCGACAGGTGGAACAGGAGTGGCAGAAGACATCCACTTAGGTTGAACTGAGGTGATCTCCAACGCCTTCAGCTCTAACTCTCGCAGACGTTATTATCCGCTCAGACTCCAACTCAAGTTTACGCACCGCTAGCTCAAACTCAAACTTGCGCACCTCAGCACGCTCCTTAGCATCAAACTCAAGTCTGGCTAGGCGTAACTTAAAAGGCTCCTCAGCCAAAGACTGAGGAGACTCTGTATAACCAGGTGAGACAGGATCAAAGTGAGGTAAAACATTTCTTACCTCAGTCTCCACAACTGGCACCACCACTGTCGTCTCCGGCCCATCCGAACTATCCACAGCTTCCGCCGGTGTGGAAGTACTCTCCTCAGGAACAGCACTCTCCACAAGTGGGGAAGGAACACCACACGTAGTATCTACCACTGGTTGCACACTCAACACACCAACTGCAACTAAATGATCAAAAACCAAGTTATATATGTCCTTCTTTAACATAGCCCGTGTTGTGGGAAGCTTAAAGTGGTCAGCTATTAAAATCAGGTCATCCTTCTTACAACATTGTAGCGCTTCACAACTAGGTGActcaaaaaaacattgcagATCAAACGAAGCCATTTTTACAAGTAATGAGCGACAATTAACCAAATTCTAAACACTAGCAACTACTACCAACCAAAATTGTTTCCACAACCACCATCATCACATGCTCAACACCCACTAGTGGGGTAGGCGGGACCAGTAATtatcccggacgagcccccaATTGTTATGCTCCTCCCCTTTTGTCTAGGGGTGAGGAGGAGTAACAAAATGGCATGTGGTAGTGGAGGAAGTGGAAAGACAACAATTGGtggtaaaacaaaaatgtttattacagaAATCAAAGgggtacaaaaatatatagatagaaataaataaactgaagcTtaagagaaaataaatcaacagaAACTGTAGTCTAAAGGTGGACTAAGGACGGTGCCAacgaaaagaaaataataaaacaaaactaaactgcctaaccaaaaactaaactaaccaAAATACAAAAGTAGCACCCGCCCCTAACCTAGTGTATCTAAACAAATATTGCTCCTTTGGCGTTATGTTGTATGTAGGGCGCCCATCTTACCTGTCCACACAGTAGACAAACAGAAGTGAGGTGGAGTAATTAATGTGCTCAAACAATGTGAGTTGTTACCAAAGTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54001 lncRNA upstream 22172 2807150 ~ 2810533 (+) True G40014
XR_002650014.1 lncRNA upstream 38890 2792540 ~ 2793815 (+) True LOC111192560
TU53999 lncRNA upstream 38994 2792534 ~ 2793711 (+) False LOC111192560
TU53934 lncRNA upstream 333414 2498869 ~ 2499291 (+) True G39965
TU53902 lncRNA upstream 407600 2419150 ~ 2425105 (+) True G39943
TU54018 lncRNA downstream 124832 2959858 ~ 3003170 (+) True G40030
TU54026 lncRNA downstream 207378 3042404 ~ 3042631 (+) True G40035
TU54110 lncRNA downstream 434229 3269255 ~ 3270205 (+) True G40095
TU54107 lncRNA downstream 442653 3277679 ~ 3278297 (+) True G40093
TU54108 lncRNA downstream 442653 3277679 ~ 3278273 (+) False G40093
XM_022670140.1 mRNA upstream 94049 2597692 ~ 2738656 (+) True LOC103029230
XM_007238867.3 mRNA upstream 426317 2392115 ~ 2406388 (+) True LOC103032316
XM_007238866.3 mRNA upstream 444617 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 444617 2382061 ~ 2388088 (+) True LOC103031990
XM_022669490.1 mRNA upstream 596947 2118643 ~ 2235758 (+) True LOC111192498
XM_022669496.1 mRNA downstream 151339 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA downstream 151340 2986366 ~ 3006325 (+) False zfand6
XM_015608092.2 mRNA downstream 151342 2986368 ~ 3006325 (+) False zfand6
XM_022669498.1 mRNA downstream 152113 2987139 ~ 3006325 (+) False zfand6
XM_022669500.1 mRNA downstream 152114 2987140 ~ 3006325 (+) False zfand6
TU53987 other upstream 21209 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 94488 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1046184 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1046469 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1047612 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 1299484 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2473520 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3698339 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4991497 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 7160727 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile