RNA id: TU54018


Basic Information

Item Value
RNA id TU54018
length 447
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G40030
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2959858 ~ 3003170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caattaatgaagattggccaccaggctgctccaatttagccatgaaacctcccacactaaaatgacaggtgttttagtttcattgtacaaccccTGTACTTGACAACTGGCTAAGTCCTGAAGGTACAGTTGCATCTTAAATAATTCGAAAAattacttaatttcagtaattcattttagaatgtgaaactcatatattatatagctgtattacacacagagtgatctattttaaacgtttaCTTATTTAATTGTTCATCATTATGGCTTAGAGACaatgaaaattagaatattatttcagaccaattggtatttttggcagtgtgggcaatgtgccaagtcctgctggaaaatgaaatccccatcCCCATAAAGGTTGACAGcagaccatcactgatcatcaggtAATTTTACAtgtcatttgtaaatcaagtgatcagagtctgg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko04146 Peroxisome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54005 lncRNA upstream 124832 2832705 ~ 2835026 (+) True G40018
TU54001 lncRNA upstream 149325 2807150 ~ 2810533 (+) True G40014
XR_002650014.1 lncRNA upstream 166043 2792540 ~ 2793815 (+) True LOC111192560
TU53999 lncRNA upstream 166147 2792534 ~ 2793711 (+) False LOC111192560
TU53934 lncRNA upstream 460567 2498869 ~ 2499291 (+) True G39965
TU54026 lncRNA downstream 39234 3042404 ~ 3042631 (+) True G40035
TU54110 lncRNA downstream 266085 3269255 ~ 3270205 (+) True G40095
TU54107 lncRNA downstream 274509 3277679 ~ 3278297 (+) True G40093
TU54108 lncRNA downstream 274509 3277679 ~ 3278273 (+) False G40093
TU54128 lncRNA downstream 379472 3382642 ~ 3401938 (+) True LOC103025846
XM_007237229.3 mRNA upstream 98475 2801018 ~ 2861383 (+) True kiaa1024
XM_022670140.1 mRNA upstream 221202 2597692 ~ 2738656 (+) True LOC103029230
XM_007238867.3 mRNA upstream 553470 2392115 ~ 2406388 (+) True LOC103032316
XM_007238866.3 mRNA upstream 571770 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 571770 2382061 ~ 2388088 (+) True LOC103031990
XM_007258155.3 mRNA downstream 5164 3008334 ~ 3042100 (+) True fah
XM_022669503.1 mRNA downstream 119422 3122592 ~ 3277613 (+) True arnt2
XM_022669504.1 mRNA downstream 119422 3122592 ~ 3277613 (+) False arnt2
XM_022669505.1 mRNA downstream 119422 3122592 ~ 3277613 (+) False arnt2
XM_022669507.1 mRNA downstream 119422 3122592 ~ 3277613 (+) False arnt2
TU53987 other upstream 148362 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 221641 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1173337 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1173622 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1174765 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 1131340 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2305376 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3530195 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4823353 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6992583 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile