RNA id: TU54026


Basic Information

Item Value
RNA id TU54026
length 228
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G40035
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3042404 ~ 3042631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAAGCacatgctaactttagcggtgagttagctaacgttaccagaaagagaactaaggttaacaacGAGCTAACTCACATTGGcagggagctagctaacatactaacattagcagagagttatctagctacattactgggaagagaatttaggttagcggagagctagctaacatgctaacataataacattagcagcgagttagctacgttaccgggaagagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54018 lncRNA upstream 39234 2959858 ~ 3003170 (+) True G40030
TU54005 lncRNA upstream 207378 2832705 ~ 2835026 (+) True G40018
TU54001 lncRNA upstream 231871 2807150 ~ 2810533 (+) True G40014
XR_002650014.1 lncRNA upstream 248589 2792540 ~ 2793815 (+) True LOC111192560
TU53999 lncRNA upstream 248693 2792534 ~ 2793711 (+) False LOC111192560
TU54110 lncRNA downstream 226624 3269255 ~ 3270205 (+) True G40095
TU54107 lncRNA downstream 235048 3277679 ~ 3278297 (+) True G40093
TU54108 lncRNA downstream 235048 3277679 ~ 3278273 (+) False G40093
TU54128 lncRNA downstream 340011 3382642 ~ 3401938 (+) True LOC103025846
TU54131 lncRNA downstream 340681 3383312 ~ 3427487 (+) True G40113
XM_007258155.3 mRNA upstream 304 3008334 ~ 3042100 (+) True fah
XM_022669496.1 mRNA upstream 36079 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA upstream 36079 2986366 ~ 3006325 (+) False zfand6
XM_015608092.2 mRNA upstream 36079 2986368 ~ 3006325 (+) False zfand6
XM_022669498.1 mRNA upstream 36079 2987139 ~ 3006325 (+) False zfand6
XM_022669503.1 mRNA downstream 79961 3122592 ~ 3277613 (+) True arnt2
XM_022669504.1 mRNA downstream 79961 3122592 ~ 3277613 (+) False arnt2
XM_022669505.1 mRNA downstream 79961 3122592 ~ 3277613 (+) False arnt2
XM_022669507.1 mRNA downstream 79961 3122592 ~ 3277613 (+) False arnt2
XM_022669506.1 mRNA downstream 80548 3123179 ~ 3277613 (+) False arnt2
TU53987 other upstream 230908 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 304187 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1255883 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1256168 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1257311 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 1091879 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2265915 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3490734 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4783892 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6953122 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile