RNA id: TU54107


Basic Information

Item Value
RNA id TU54107
length 619
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G40093
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3277679 ~ 3278297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttttttttttttttgcgaaccGTTCAGGCTTCAAGTGCTCTTCATTAACAAAAGCTAAGCTATCATCACCAGCCTCGTGGCAGCAGCATTGGCAGCAGCATTGGCAGCAGCAGTGAAGGGGTAGAGCATTGCGGTGTGTGATCTGTTGATCTGTCATAGACTTTGTAATCCTttgaattctatttttttgtttttttggaactAACGACGAGGACTTTTGAGGTCTAGATCTTTTACACGATTAAGAAACGGTGTATCGAAATGAAGGACTGATAGGAAAACTTAAAGACTTAAAACGAATGAAGAAAACCCCTTTTTGCTAAATCGACGTGgatgttttaatgtaaataatgtgatttttatgtGGGATGGTGTGTTTCGTCGTcgtcgtcttcttcttcttcttcttgttttcaCCTCCGCCGCGACATGCGTCCTTGTGTAGGTTTAATATCGTCCATGGTGTGCAATGTGGGTACGTATTTAACTCTGGGTATTTAGTTAGCCTGTTAACTGTACGATGAGTTTAGACTTGTATAAATCGTGTACATGTGTTCCATTATTTTTGTGATGACAGACAGTGCTCGTGACAATAAACTCTCATCCAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54110 lncRNA upstream 7474 3269255 ~ 3270205 (+) True G40095
TU54026 lncRNA upstream 235048 3042404 ~ 3042631 (+) True G40035
TU54018 lncRNA upstream 274509 2959858 ~ 3003170 (+) True G40030
TU54005 lncRNA upstream 442653 2832705 ~ 2835026 (+) True G40018
TU54001 lncRNA upstream 467146 2807150 ~ 2810533 (+) True G40014
TU54128 lncRNA downstream 104345 3382642 ~ 3401938 (+) True LOC103025846
TU54131 lncRNA downstream 105015 3383312 ~ 3427487 (+) True G40113
TU54129 lncRNA downstream 121219 3399516 ~ 3487173 (+) True G40112
TU54152 lncRNA downstream 161593 3439890 ~ 3440612 (+) True G40127
TU54214 lncRNA downstream 376503 3654800 ~ 3655382 (+) True G40186
XM_022669503.1 mRNA upstream 66 3122592 ~ 3277613 (+) True arnt2
XM_022669504.1 mRNA upstream 66 3122592 ~ 3277613 (+) False arnt2
XM_022669505.1 mRNA upstream 66 3122592 ~ 3277613 (+) False arnt2
XM_022669507.1 mRNA upstream 66 3122592 ~ 3277613 (+) False arnt2
XM_022669506.1 mRNA upstream 66 3123179 ~ 3277613 (+) False arnt2
XM_022670141.1 mRNA downstream 104382 3382679 ~ 3399314 (+) False LOC103025846
XM_022669508.1 mRNA downstream 151185 3429482 ~ 3645688 (+) True cemip
XM_022669509.1 mRNA downstream 151185 3429482 ~ 3645688 (+) False cemip
XM_007258148.3 mRNA downstream 383378 3661675 ~ 3665106 (+) True tlnrd1
XM_022669511.1 mRNA downstream 412421 3690718 ~ 3750084 (+) False il16
TU53987 other upstream 466183 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 539462 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1491158 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1491443 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1492586 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 856213 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2030249 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3255068 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4548226 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6717456 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile