RNA id: TU54110


Basic Information

Item Value
RNA id TU54110
length 254
lncRNA type intronic
GC content 0.37
exon number 2
gene id G40095
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3269255 ~ 3270205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaaaTCAAGAGAAAAGAAGGGATAGAGAGAGTTCTggacataaaaaacataaggGACAGAGAGATATTTTAGGACATTAagtgaaaagaagaaaaaagacagagaagaaGGTAAAAAACGATTtaggacagagagacaaaacaattaaaagaagAACAGACAATTCAGCACAGAGAGTGGTAGACAAAGACAAACTGCGAGATAAAAAGACTAATGGAAGACAGAGACAAGAGAGGGGgaaagagggacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54026 lncRNA upstream 226624 3042404 ~ 3042631 (+) True G40035
TU54018 lncRNA upstream 266085 2959858 ~ 3003170 (+) True G40030
TU54005 lncRNA upstream 434229 2832705 ~ 2835026 (+) True G40018
TU54001 lncRNA upstream 458722 2807150 ~ 2810533 (+) True G40014
XR_002650014.1 lncRNA upstream 475440 2792540 ~ 2793815 (+) True LOC111192560
TU54107 lncRNA downstream 7474 3277679 ~ 3278297 (+) True G40093
TU54108 lncRNA downstream 7474 3277679 ~ 3278273 (+) False G40093
TU54128 lncRNA downstream 112437 3382642 ~ 3401938 (+) True LOC103025846
TU54131 lncRNA downstream 113107 3383312 ~ 3427487 (+) True G40113
TU54129 lncRNA downstream 129311 3399516 ~ 3487173 (+) True G40112
XM_007258155.3 mRNA upstream 227155 3008334 ~ 3042100 (+) True fah
XM_022669498.1 mRNA upstream 262930 2987139 ~ 3006325 (+) False zfand6
XM_022670141.1 mRNA downstream 112474 3382679 ~ 3399314 (+) False LOC103025846
XM_022669508.1 mRNA downstream 159277 3429482 ~ 3645688 (+) True cemip
XM_022669509.1 mRNA downstream 159277 3429482 ~ 3645688 (+) False cemip
XM_007258148.3 mRNA downstream 391470 3661675 ~ 3665106 (+) True tlnrd1
XM_022669511.1 mRNA downstream 420513 3690718 ~ 3750084 (+) False il16
TU53987 other upstream 457759 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 531038 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1482734 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1483019 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1484162 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 864305 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2038341 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3263160 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4556318 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6725548 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile