RNA id: TU54152


Basic Information

Item Value
RNA id TU54152
length 250
lncRNA type intronic
GC content 0.38
exon number 2
gene id G40127
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3439890 ~ 3440612 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AgtttcagatcatacacacctgTTATTAGGACTGAATACTCAAATTTGTaattagaaccaatcacagtctGGAGTAGATTTAAGACCAATCAAATGTGTAAgtaggaccaatcacagtcagggggaggtctcaatataaaaaagacaGTGATTAGAACCAATCCCAGTCAGACAGGAGGTATCAGAACAAGCACGTATTaaaaccaatcacagtcaagGGAAGATCTCACAACAAAGTGAAGCAgtgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54131 lncRNA upstream 12403 3383312 ~ 3427487 (+) True G40113
TU54128 lncRNA upstream 37952 3382642 ~ 3401938 (+) True LOC103025846
TU54107 lncRNA upstream 161593 3277679 ~ 3278297 (+) True G40093
TU54108 lncRNA upstream 161617 3277679 ~ 3278273 (+) False G40093
TU54110 lncRNA upstream 169685 3269255 ~ 3270205 (+) True G40095
TU54214 lncRNA downstream 214188 3654800 ~ 3655382 (+) True G40186
TU54216 lncRNA downstream 215098 3655710 ~ 3657053 (+) True G40187
TU54213 lncRNA downstream 221088 3661700 ~ 3683184 (+) False tlnrd1
TU54233 lncRNA downstream 319549 3760161 ~ 3763427 (+) True G40194
TU54322 lncRNA downstream 396986 3837598 ~ 3837861 (+) False LOC103044341
XM_022670141.1 mRNA upstream 40576 3382679 ~ 3399314 (+) False LOC103025846
XM_022669504.1 mRNA upstream 162277 3122592 ~ 3277613 (+) False arnt2
XM_007258148.3 mRNA downstream 221063 3661675 ~ 3665106 (+) True tlnrd1
XM_022669511.1 mRNA downstream 250106 3690718 ~ 3750084 (+) False il16
XM_007258145.3 mRNA downstream 250107 3690719 ~ 3750084 (+) True il16
XM_007258147.3 mRNA downstream 250107 3690719 ~ 3750084 (+) False il16
XM_022669512.1 mRNA downstream 277724 3718336 ~ 3750082 (+) False il16
TU53987 other upstream 628394 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 701673 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1653369 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1653654 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1654797 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 693898 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1867934 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3092753 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4385911 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6555141 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile