RNA id: TU54213


Basic Information

Item Value
RNA id TU54213
length 508
lncRNA type sense_over
GC content 0.53
exon number 3
gene id tlnrd1
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3661675 ~ 3683184 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGGCTAGCTAAACTGGAGATATATCAGCCTGTGAACCGGATCATAGTGAAAGTAGAAGGCAGAGGCGAGGCGAAAAACATGTCGGCGGGGCTGAAAAGGGAATAAACGGGCCGGCGGAGGACGGAGGGGGGCGAGAGGCGGCTGTTTGGACGTGTTTTCGGCTGGACTTCGCTCTCTTACCGGCTGCAGCCGCGTCCCATAGCCGAGGCCTGTGTGTGGAAGCGGTGGGTTTGAGGAGGGTGAAGCAACTTTTACTGTGAGGATTAATTCAGCTttcagAGTGAAGCAGCCACACCCTCCAGAGCTTCCTGATACCAAGATGTTCTACTAGGTTAAAAAGCTGGGATATAAAAAGCCCAGGCTGTCTGCAGGTACACCACAGAGGTTCCTCTACTGGAGCAGAGaagagagagcacatctattctcttctacacaaccatggaccacagattccttgcagtgatggtgcagcagcagaacatactcctccatgtgctggaccagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54216 lncRNA upstream 4647 3655710 ~ 3657053 (+) True G40187
TU54214 lncRNA upstream 6318 3654800 ~ 3655382 (+) True G40186
TU54129 lncRNA upstream 174527 3399516 ~ 3487173 (+) True G40112
TU54152 lncRNA upstream 221088 3439890 ~ 3440612 (+) True G40127
TU54131 lncRNA upstream 234213 3383312 ~ 3427487 (+) True G40113
TU54233 lncRNA downstream 76977 3760161 ~ 3763427 (+) True G40194
TU54322 lncRNA downstream 154414 3837598 ~ 3837861 (+) False LOC103044341
TU54326 lncRNA downstream 192239 3875423 ~ 3875630 (+) True G40274
TU54327 lncRNA downstream 208448 3891632 ~ 3891893 (+) True G40275
TU54340 lncRNA downstream 217872 3901056 ~ 3933592 (+) True G40287
XM_022669508.1 mRNA upstream 16012 3429482 ~ 3645688 (+) True cemip
XM_022669509.1 mRNA upstream 16012 3429482 ~ 3645688 (+) False cemip
XM_022670141.1 mRNA upstream 262386 3382679 ~ 3399314 (+) False LOC103025846
XM_022669507.1 mRNA upstream 384087 3122592 ~ 3277613 (+) False arnt2
XM_022669511.1 mRNA downstream 7534 3690718 ~ 3750084 (+) False il16
XM_007258145.3 mRNA downstream 7535 3690719 ~ 3750084 (+) True il16
XM_007258147.3 mRNA downstream 7535 3690719 ~ 3750084 (+) False il16
XM_022669512.1 mRNA downstream 35152 3718336 ~ 3750082 (+) False il16
XM_022670143.1 mRNA downstream 154323 3837507 ~ 3856474 (+) True LOC103044341
TU53987 other upstream 850204 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 923483 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1875179 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1875464 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1876607 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 451326 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1625362 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2850181 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4143339 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6312569 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile