RNA id: TU54233


Basic Information

Item Value
RNA id TU54233
length 660
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G40194
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3760161 ~ 3763427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTGACGTAACTGTGCCGTCTTCATACTGCTTAGCTAAAATAACATCCACAAAGTCCCGCGGTGATATAATGCCCATAGCAGCAGAGGGAGTGACAGTTCTGCACACCGTTACGTcTGAAGAAACTTGTTCAAGCAGCTCAAACTTCTTCACATTGTTGTCCCATTTCACACGAAGCCCGTTGGGGTCCGGTTTCAGGCATTCCCACACTTTCTGCGGACTGCCATTCACTATCCCCTCTCCTTTATACACGTTTCCAGTAAACTCGGCCGATGGTCTCCAGTACACCACAACTTCACTCGTTTTCTTGCAGCTTTTCCAGCCGGACTGGTCTCTGCTGTAGCCCAGAAGCAGCTCCGCCACCCAGTTCGCCTTCTCCTCATAATCCATTACAGCTCTGAACCAGATCCTCCAGTACTACACAGCAGATGTCagtgcaccacacacacacacacacacacaagcacactaAACTACTGCGAAACCCCTAATGGGAGCTCACCACTCATTCATTCCAGTTCAGCTGCTGTGATCACTAGTCCAGATCTCCTGTTCCAGAAGCTGATCAGGACGGTCGATCACTGACACGCTGATAATCCTGTAAAAGATCTCCAGCAGGATCACAGAGAACCTCACTGTCCTGCTCTGCTTTCTCTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54213 lncRNA upstream 76977 3661700 ~ 3683184 (+) False tlnrd1
TU54216 lncRNA upstream 103108 3655710 ~ 3657053 (+) True G40187
TU54214 lncRNA upstream 104779 3654800 ~ 3655382 (+) True G40186
TU54129 lncRNA upstream 272988 3399516 ~ 3487173 (+) True G40112
TU54152 lncRNA upstream 319549 3439890 ~ 3440612 (+) True G40127
TU54322 lncRNA downstream 74171 3837598 ~ 3837861 (+) False LOC103044341
TU54326 lncRNA downstream 111996 3875423 ~ 3875630 (+) True G40274
TU54327 lncRNA downstream 128205 3891632 ~ 3891893 (+) True G40275
TU54340 lncRNA downstream 137629 3901056 ~ 3933592 (+) True G40287
TU54344 lncRNA downstream 170692 3934119 ~ 3934377 (+) True G40291
XM_022669511.1 mRNA upstream 10077 3690718 ~ 3750084 (+) False il16
XM_007258145.3 mRNA upstream 10077 3690719 ~ 3750084 (+) True il16
XM_007258147.3 mRNA upstream 10077 3690719 ~ 3750084 (+) False il16
XM_022669512.1 mRNA upstream 10079 3718336 ~ 3750082 (+) False il16
XM_007258148.3 mRNA upstream 95055 3661675 ~ 3665106 (+) True tlnrd1
XM_022670143.1 mRNA downstream 74080 3837507 ~ 3856474 (+) True LOC103044341
XM_022669514.1 mRNA downstream 367195 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 671125 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 671125 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 740970 4504397 ~ 4515385 (+) True LOC103046723
TU53987 other upstream 948665 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1021944 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1973640 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1973925 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1975068 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 371083 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1545119 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2769938 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4063096 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6232326 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile