RNA id: TU54326


Basic Information

Item Value
RNA id TU54326
length 208
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G40274
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3875423 ~ 3875630 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attcactgtatacctgtaactctacctcttcactactttactttaactgatgctctcaaacactttattaagagacaagaattaactcttgatgagttcagcacagctgttaactgaaagcctgaattccaggtgactctacctcataaaactgactgagaaaatccagcagagatgtgcaaaactgatcatctaaacaagaggagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54322 lncRNA upstream 37562 3837598 ~ 3837861 (+) False LOC103044341
TU54233 lncRNA upstream 111996 3760161 ~ 3763427 (+) True G40194
TU54213 lncRNA upstream 192239 3661700 ~ 3683184 (+) False tlnrd1
TU54216 lncRNA upstream 218370 3655710 ~ 3657053 (+) True G40187
TU54214 lncRNA upstream 220041 3654800 ~ 3655382 (+) True G40186
TU54327 lncRNA downstream 16002 3891632 ~ 3891893 (+) True G40275
TU54340 lncRNA downstream 25426 3901056 ~ 3933592 (+) True G40287
TU54344 lncRNA downstream 58489 3934119 ~ 3934377 (+) True G40291
TU54346 lncRNA downstream 69946 3945576 ~ 3945775 (+) True G40293
TU54347 lncRNA downstream 103255 3978885 ~ 3979113 (+) True G40294
XM_022670143.1 mRNA upstream 18949 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 125339 3690718 ~ 3750084 (+) False il16
XM_007258145.3 mRNA upstream 125339 3690719 ~ 3750084 (+) True il16
XM_007258147.3 mRNA upstream 125339 3690719 ~ 3750084 (+) False il16
XM_022669512.1 mRNA upstream 125341 3718336 ~ 3750082 (+) False il16
XM_022669514.1 mRNA downstream 254992 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 558922 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 558922 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 628767 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 659604 4535234 ~ 4689998 (+) False LOC103028701
TU53987 other upstream 1063927 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1137206 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2088902 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 2089187 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 2090330 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 258880 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1432916 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2657735 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3950893 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6120123 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile