RNA id: TU54327


Basic Information

Item Value
RNA id TU54327
length 262
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G40275
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3891632 ~ 3891893 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaaacacagaataaagttaatgtgctcttacagctctacaacactgagacctgccaatcaacatgtatattataattactgcacgcccaggataaggtagctttgggcaacagacaacacaaagatggtaagtaagggagaggccacacccaatatgcaaatatatggtaccaggagcctataggaaagctgcatgaaccaacactgtagaaagagcattgacacaggtagtgactaaaaccctagtaaatataacaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54326 lncRNA upstream 16002 3875423 ~ 3875630 (+) True G40274
TU54322 lncRNA upstream 53771 3837598 ~ 3837861 (+) False LOC103044341
TU54233 lncRNA upstream 128205 3760161 ~ 3763427 (+) True G40194
TU54213 lncRNA upstream 208448 3661700 ~ 3683184 (+) False tlnrd1
TU54216 lncRNA upstream 234579 3655710 ~ 3657053 (+) True G40187
TU54340 lncRNA downstream 9163 3901056 ~ 3933592 (+) True G40287
TU54344 lncRNA downstream 42226 3934119 ~ 3934377 (+) True G40291
TU54346 lncRNA downstream 53683 3945576 ~ 3945775 (+) True G40293
TU54347 lncRNA downstream 86992 3978885 ~ 3979113 (+) True G40294
TU54353 lncRNA downstream 95619 3987512 ~ 3988367 (+) True G40298
XM_022670143.1 mRNA upstream 35158 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 141548 3690718 ~ 3750084 (+) False il16
XM_022669514.1 mRNA downstream 238729 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 542659 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 542659 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 612504 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 643341 4535234 ~ 4689998 (+) False LOC103028701
TU53987 other upstream 1080136 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1153415 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2105111 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 2105396 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 2106539 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 242617 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1416653 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2641472 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3934630 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6103860 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile