RNA id: TU54344



Basic Information


Item Value
RNA id TU54344
length 259
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G40291
representative True

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3934119 ~ 3934377 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGGCAGGATAAGGCTGAGGAGGCTGGACTGGACTGGGAGCTAGATTGAGTGTTAtgaggaggaaaaacaccagacTGAGAGGAAACCTGAGGCTGTACAGAACTAGATGGAAAGGCAAGCTGAGGTTGAGAAGGCTGGGAACTGGACTGGGAGCTAGATTGAGTGTTAtgaggaggaaaaacaccagacTGAGAGGAAACCTGAGGCTGTACAGAACTAGATGGAAAGGCAGGATAAGGTTGAAGGGGCTGAGGCCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54340 lncRNA upstream 527 3901056 ~ 3933592 (+) True G40287
TU54327 lncRNA upstream 42226 3891632 ~ 3891893 (+) True G40275
TU54326 lncRNA upstream 58489 3875423 ~ 3875630 (+) True G40274
TU54322 lncRNA upstream 96258 3837598 ~ 3837861 (+) False LOC103044341
TU54233 lncRNA upstream 170692 3760161 ~ 3763427 (+) True G40194
TU54346 lncRNA downstream 11199 3945576 ~ 3945775 (+) True G40293
TU54347 lncRNA downstream 44508 3978885 ~ 3979113 (+) True G40294
TU54353 lncRNA downstream 53135 3987512 ~ 3988367 (+) True G40298
TU54357 lncRNA downstream 62169 3996546 ~ 3997000 (+) True G40301
TU54358 lncRNA downstream 63828 3998205 ~ 3998553 (+) True G40302
XM_022670143.1 mRNA upstream 77645 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 184035 3690718 ~ 3750084 (+) False il16
XM_022669514.1 mRNA downstream 196245 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 500175 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 500175 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 570020 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 600857 4535234 ~ 4689998 (+) False LOC103028701
TU53987 other upstream 1122623 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1195902 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2147598 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 2147883 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 2149026 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 200133 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1374169 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2598988 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3892146 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6061376 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile