RNA id: TU54347


Basic Information

Item Value
RNA id TU54347
length 229
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G40294
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3978885 ~ 3979113 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagtcaatcctgttggatgtggttggttcttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacatgcaccaacaatttgtcctcttttgaactctggtatgtcacccataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54346 lncRNA upstream 33110 3945576 ~ 3945775 (+) True G40293
TU54344 lncRNA upstream 44508 3934119 ~ 3934377 (+) True G40291
TU54340 lncRNA upstream 45293 3901056 ~ 3933592 (+) True G40287
TU54327 lncRNA upstream 86992 3891632 ~ 3891893 (+) True G40275
TU54326 lncRNA upstream 103255 3875423 ~ 3875630 (+) True G40274
TU54353 lncRNA downstream 8399 3987512 ~ 3988367 (+) True G40298
TU54357 lncRNA downstream 17433 3996546 ~ 3997000 (+) True G40301
TU54358 lncRNA downstream 19092 3998205 ~ 3998553 (+) True G40302
TU54359 lncRNA downstream 19573 3998686 ~ 3998946 (+) True G40303
TU54365 lncRNA downstream 76729 4055842 ~ 4056370 (+) True G40308
XM_022670143.1 mRNA upstream 122411 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 228801 3690718 ~ 3750084 (+) False il16
XM_022669514.1 mRNA downstream 151509 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 455439 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 455439 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 525284 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 556121 4535234 ~ 4689998 (+) False LOC103028701
TU53987 other upstream 1167389 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1240668 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2192364 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 2192649 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 2193792 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 155397 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1329433 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2554252 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3847410 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6016640 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile