RNA id: TU54358


Basic Information

Item Value
RNA id TU54358
length 247
lncRNA type inter_gene
GC content 0.65
exon number 2
gene id G40302
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3998205 ~ 3998553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagctccagctccagcagctcccgctgctccggcctcagcctcagctccagctccagcagctcccgctgctccggcctcagcctcagctccagctccagcagctcccgctgctcctgTATCTGCTCCTCGAACTTTGTATACCCCCTGGCCTGCCCCAAGGCCCCCTGTCTTTGCccccagaactgtgcccaggctggctccttggacttccctacagacttttgccagtcctgggcacccaccaaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54357 lncRNA upstream 1205 3996546 ~ 3997000 (+) True G40301
TU54353 lncRNA upstream 9838 3987512 ~ 3988367 (+) True G40298
TU54347 lncRNA upstream 19092 3978885 ~ 3979113 (+) True G40294
TU54346 lncRNA upstream 52430 3945576 ~ 3945775 (+) True G40293
TU54344 lncRNA upstream 63828 3934119 ~ 3934377 (+) True G40291
TU54359 lncRNA downstream 133 3998686 ~ 3998946 (+) True G40303
TU54365 lncRNA downstream 57289 4055842 ~ 4056370 (+) True G40308
TU54384 lncRNA downstream 199006 4197559 ~ 4198754 (+) True LOC111192499
XR_002649924.1 lncRNA downstream 199008 4197561 ~ 4198696 (+) False LOC111192499
TU54388 lncRNA downstream 267306 4265859 ~ 4266532 (+) True G40325
XM_022670143.1 mRNA upstream 141731 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 248121 3690718 ~ 3750084 (+) False il16
XM_022669514.1 mRNA downstream 132069 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 435999 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 435999 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 505844 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 536681 4535234 ~ 4689998 (+) False LOC103028701
TU53987 other upstream 1186709 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1259988 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2211684 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 2211969 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 2213112 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 135957 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1309993 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2534812 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3827970 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 5997200 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile