RNA id: TU54359


Basic Information

Item Value
RNA id TU54359
length 225
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G40303
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3998686 ~ 3998946 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGTCCAGTTTTGTCCAGTCCCTGTCTagtgtccagccccctgtccagtctcagccccctgtccagtctcagccccgtgtccagtctcagccctgtgttctgttccctgtccagtctcagtccccagtccagtcgtttgttcagtctgaaccccctgtccagtcccagtctcagTTCCCTGCCCGGTCtacgtctcctgtccagtttccattccctgtccagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54358 lncRNA upstream 133 3998205 ~ 3998553 (+) True G40302
TU54357 lncRNA upstream 1686 3996546 ~ 3997000 (+) True G40301
TU54353 lncRNA upstream 10319 3987512 ~ 3988367 (+) True G40298
TU54347 lncRNA upstream 19573 3978885 ~ 3979113 (+) True G40294
TU54346 lncRNA upstream 52911 3945576 ~ 3945775 (+) True G40293
TU54365 lncRNA downstream 56896 4055842 ~ 4056370 (+) True G40308
TU54384 lncRNA downstream 198613 4197559 ~ 4198754 (+) True LOC111192499
XR_002649924.1 lncRNA downstream 198615 4197561 ~ 4198696 (+) False LOC111192499
TU54388 lncRNA downstream 266913 4265859 ~ 4266532 (+) True G40325
TU54398 lncRNA downstream 335817 4334763 ~ 4336648 (+) True G40332
XM_022670143.1 mRNA upstream 142212 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 248602 3690718 ~ 3750084 (+) False il16
XM_022669514.1 mRNA downstream 131676 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 435606 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 435606 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 505451 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 536288 4535234 ~ 4689998 (+) False LOC103028701
TU53987 other upstream 1187190 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1260469 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2212165 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 2212450 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 2213593 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 135564 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1309600 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2534419 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3827577 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 5996807 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile