RNA id: TU54444


Basic Information

Item Value
RNA id TU54444
length 242
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G40375
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 4408620 ~ 4408861 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCTTCCCCGGCCCACGTTCATccctgtggaaaaaataaatctgaattagtaacagcggtttatggagaacacgctcataattacactatttacacagtaaatcactcagttacaggtaactctagttattccctctaacaattaaactatttacacattaaatcactgaattacagGTTATTCTACAgtgttacactatttacacagtaaatcacttaGTTATACGTAACAGTGacttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54401 lncRNA upstream 67485 4339955 ~ 4341135 (+) True G40333
TU54398 lncRNA upstream 71972 4334763 ~ 4336648 (+) True G40332
TU54388 lncRNA upstream 142088 4265859 ~ 4266532 (+) True G40325
TU54384 lncRNA upstream 209866 4197559 ~ 4198754 (+) True LOC111192499
XR_002649924.1 lncRNA upstream 209924 4197561 ~ 4198696 (+) False LOC111192499
TU54458 lncRNA downstream 69010 4477871 ~ 4495735 (+) True G40388
TU54463 lncRNA downstream 106380 4515241 ~ 4515611 (+) False LOC103046723
TU54462 lncRNA downstream 107214 4516075 ~ 4531846 (+) True G40392
TU54473 lncRNA downstream 163592 4572453 ~ 4572730 (+) True G40402
TU54472 lncRNA downstream 288809 4697670 ~ 4751569 (+) True G40401
XM_022669514.1 mRNA upstream 14325 4130622 ~ 4394295 (+) True LOC103021590
XM_022670143.1 mRNA upstream 552146 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 658536 3690718 ~ 3750084 (+) False il16
XM_007258141.3 mRNA downstream 25691 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 25691 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 95536 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 126373 4535234 ~ 4689998 (+) False LOC103028701
XM_022669516.1 mRNA downstream 126374 4535235 ~ 4744552 (+) True LOC103028701
TU54378 other upstream 273035 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 1597124 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1670403 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2622099 1783424 ~ 1786521 (+) False muc2
TU54660 other downstream 899685 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2124504 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3417662 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 5586892 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 5883476 10292337 ~ 10292409 (+) True trnar-ucg_1

Expression Profile