RNA id: TU54458


Basic Information

Item Value
RNA id TU54458
length 1357
lncRNA type sense_over
GC content 0.32
exon number 3
gene id G40388
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 4477871 ~ 4495735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatattatatatatatatatatatatatatatatatatactgtgcaGAGGTTTTGACGCacctaaacattaaattaataaaaattgctattttttttatatcagagtACCATATCTCTgctgtttaatattatatatgtatatgatcCGTTTTGTCTGCCTCCATCACGTTACAGTGATTATAACTCTAGCCTCGAGTCACGGGGCACAGAGGAAAGTAAATAATCaaggcttgttttttttaatcccttAATTTTTTCTGTGCCCCTTAAATGAATCAAAATTAACACATTCATTTGACAGCCTTAATTAACATACAAACACAAGCCAATAAAGTGCAGCATTAGAAACAGGAATGTTAcaatccattattttttttctcaattaaaTCCAAGTACTCAGTACTGGTTTGGTTTgatcacagtattttttataaataatacaaatataaaaatacaaatatacatatttagatATTCTTTCAAAATTAGAGGAATTAAAAATTGCTCCTgcctttgttttgtttctgctcAGGATAacgttggggagctttatattTGCTCACATAGACACACGTGAAGCAATTCATTGCAGCAGCCTGTTGTCTTCtattgtaaaagtgtttaaaatgaatggtTGGCCATGCTTATATAGTAAGTAAAGTATCAATGCTACATTTCAGGTCCAGGACTGGTGTGCAATGAAACAGAGAACCTGTAAACACTgagttatttttgtgtattatgtAATTTTTGTATTAGTAGATGACTAAAGAATACTAgatattgagaaaaaaaaagtttgttattGTAAtctaataatttaatttgagCATTTAACAAAAATCCacaaattagttaaaaaaacagtcgctaaatatttaaacattatatgCATCCCGATTATGGGGGATGTCTTTGGTAACTGATTATACGATTTATCCACAGCAGATGTTATGGTTAAAAACACTGGATTCCTCCTTTAATATTGTACTTCTTTCCGTTTCTGTGCCCTCAGTGATTGCAGCTTGAGACGCGCAGGCCTTAATGTGAACTTTTcttgtatacagctctggtgcTCAGGCGGATTTAGCTTGAATGAACATTTTCCAAAAATAGAATGGACTGTTCACTACCAAACACTACTACTGACCCCTGACCCCTCTCTATACCTGCCACTGCCTGTGTCTTTCCAGTGTTTTTACTCCAAATCCCTAACCCAGTTTCTGTCACTACAGTACTCAGTGAGGAGAGGAGGACATGGGTGgtctgtctttttgtttttccttagtataatttatacagaaagtgttttatagatgtaaatgaatatattacatactgtatattgcataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54444 lncRNA upstream 69010 4408620 ~ 4408861 (+) True G40375
TU54401 lncRNA upstream 136736 4339955 ~ 4341135 (+) True G40333
TU54398 lncRNA upstream 141223 4334763 ~ 4336648 (+) True G40332
TU54388 lncRNA upstream 211339 4265859 ~ 4266532 (+) True G40325
TU54384 lncRNA upstream 279117 4197559 ~ 4198754 (+) True LOC111192499
TU54463 lncRNA downstream 19506 4515241 ~ 4515611 (+) False LOC103046723
TU54462 lncRNA downstream 20340 4516075 ~ 4531846 (+) True G40392
TU54473 lncRNA downstream 76718 4572453 ~ 4572730 (+) True G40402
TU54472 lncRNA downstream 201935 4697670 ~ 4751569 (+) True G40401
TU54495 lncRNA downstream 418154 4913889 ~ 4915973 (+) True G40424
XM_022669514.1 mRNA upstream 83576 4130622 ~ 4394295 (+) True LOC103021590
XM_022670143.1 mRNA upstream 621397 3837507 ~ 3856474 (+) True LOC103044341
XM_007258145.3 mRNA upstream 727787 3690719 ~ 3750084 (+) True il16
XM_022669515.1 mRNA downstream 8662 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 39499 4535234 ~ 4689998 (+) False LOC103028701
XM_022669516.1 mRNA downstream 39500 4535235 ~ 4744552 (+) True LOC103028701
XM_022669519.1 mRNA downstream 266458 4762193 ~ 4933029 (+) True efl1
XM_007258133.3 mRNA downstream 506030 5001765 ~ 5006585 (+) True mex3b
TU54378 other upstream 342286 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 1666375 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1739654 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2691350 1783424 ~ 1786521 (+) False muc2
TU54660 other downstream 812811 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2037630 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3330788 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 5500018 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 5796602 10292337 ~ 10292409 (+) True trnar-ucg_1

Expression Profile