RNA id: TU54802



Basic Information


Item Value
RNA id TU54802
length 220
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G40660
representative True

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 5840554 ~ 5840773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TTttcggatacaatccgggttagcactcgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtgggtggtccttcttggtggtatgctgacattaccctggataccgtggctcttgatacatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatctgtcctcttttgaactctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54748 lncRNA upstream 90842 5749131 ~ 5749712 (+) True G40617
TU54674 lncRNA upstream 381930 5445193 ~ 5458624 (+) True G40556
TU54663 lncRNA upstream 528210 5308546 ~ 5312344 (+) True snrpa1
TU54611 lncRNA upstream 677225 5158991 ~ 5163329 (+) False G40511
TU54612 lncRNA upstream 677225 5158991 ~ 5163329 (+) False G40511
TU54837 lncRNA downstream 223625 6064398 ~ 6064642 (+) True G40692
TU54840 lncRNA downstream 251098 6091871 ~ 6092282 (+) True G40695
TU54842 lncRNA downstream 253536 6094309 ~ 6129206 (+) True G40697
TU54854 lncRNA downstream 357186 6197959 ~ 6198236 (+) True G40709
TU54892 lncRNA downstream 623361 6464134 ~ 6464371 (+) True G40742
XM_022669530.1 mRNA upstream 4467 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 5468 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 6679 5814514 ~ 5833875 (+) False lims1
XM_022670144.1 mRNA upstream 61280 5762651 ~ 5779274 (+) True adamts17
XM_015602437.2 mRNA upstream 90189 5722876 ~ 5750365 (+) False cers3
XM_007252577.2 mRNA downstream 1036999 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA downstream 1036999 6877772 ~ 7013787 (+) False pcdh17
XM_007252576.3 mRNA downstream 2261502 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 2521064 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 2541483 8382256 ~ 8400857 (+) True tmem44
TU54660 other upstream 529747 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 1704969 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 3029058 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 3102337 2735596 ~ 2738217 (+) False LOC103029230
TU53709 other upstream 4054318 1783424 ~ 1786236 (+) False muc2
TU54910 other downstream 692592 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 1985750 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 4154980 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 4451564 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 4914436 10755209 ~ 10755281 (+) True trnam-cau_21

Expression Profile