RNA id: TU54837


Basic Information

Item Value
RNA id TU54837
length 245
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G40692
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 6064398 ~ 6064642 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCAGCGCTGCTGCTGTGAGGCCTGAAGCCGCGGGTGAAACAAAAACCCGggctggatctgcagcctcgcCGGTAGAGTCAAGCGCGGAAAGCGCGGGGCCGCCGATAAAGTCCAGCGTGGAGAGAGTCCCAGAGCGCGGCTGAGCGGCCGCGGAGATAGTCCCGGAGAGAGGCTGGATTGCAGCGGCGaaagccagctcctcagcctgaggtgctggcGCTGCAGCTGCAGGGCTTGAGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54802 lncRNA upstream 223625 5840554 ~ 5840773 (+) True G40660
TU54748 lncRNA upstream 314686 5749131 ~ 5749712 (+) True G40617
TU54674 lncRNA upstream 605774 5445193 ~ 5458624 (+) True G40556
TU54663 lncRNA upstream 752054 5308546 ~ 5312344 (+) True snrpa1
TU54611 lncRNA upstream 901069 5158991 ~ 5163329 (+) False G40511
TU54840 lncRNA downstream 27229 6091871 ~ 6092282 (+) True G40695
TU54842 lncRNA downstream 29667 6094309 ~ 6129206 (+) True G40697
TU54854 lncRNA downstream 133317 6197959 ~ 6198236 (+) True G40709
TU54892 lncRNA downstream 399492 6464134 ~ 6464371 (+) True G40742
TU54901 lncRNA downstream 444430 6509072 ~ 6509310 (+) True G40749
XM_022669530.1 mRNA upstream 228311 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 229312 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 230523 5814514 ~ 5833875 (+) False lims1
XM_022670144.1 mRNA upstream 285124 5762651 ~ 5779274 (+) True adamts17
XM_015602438.2 mRNA upstream 314033 5728545 ~ 5750365 (+) False cers3
XM_007252577.2 mRNA downstream 813130 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA downstream 813130 6877772 ~ 7013787 (+) False pcdh17
XM_007252576.3 mRNA downstream 2037633 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 2297195 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 2317614 8382256 ~ 8400857 (+) True tmem44
TU54660 other upstream 753591 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 1928813 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 3252902 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 3326181 2735596 ~ 2738217 (+) False LOC103029230
TU53709 other upstream 4278162 1783424 ~ 1786236 (+) False muc2
TU54910 other downstream 468723 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 1761881 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 3931111 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 4227695 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 4690567 10755209 ~ 10755281 (+) True trnam-cau_21

Expression Profile