RNA id: TU54892


Basic Information

Item Value
RNA id TU54892
length 238
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G40742
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 6464134 ~ 6464371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaacatgaagctcatgtgtcaacattgtgactccaaactgctaaactctaaacacaattccatatgttctcactcaaatatcattctaaatcacagctttgcatatcactaaacacaaattgCATCATTTAGAAAACCTTGCTCACCTAAGAATCACTGACCTTCTAATACAAAACTCTAATTATCAATTCGTCTCACACAAGTTGCAGCTATGTAAACGTAATTAGAAGAACGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54854 lncRNA upstream 265898 6197959 ~ 6198236 (+) True G40709
TU54842 lncRNA upstream 334928 6094309 ~ 6129206 (+) True G40697
TU54840 lncRNA upstream 371852 6091871 ~ 6092282 (+) True G40695
TU54837 lncRNA upstream 399492 6064398 ~ 6064642 (+) True G40692
TU54802 lncRNA upstream 623361 5840554 ~ 5840773 (+) True G40660
TU54901 lncRNA downstream 44701 6509072 ~ 6509310 (+) True G40749
TU54913 lncRNA downstream 76335 6540706 ~ 6540955 (+) True G40759
TU54917 lncRNA downstream 151595 6615966 ~ 6616168 (+) True G40763
TU54935 lncRNA downstream 424459 6888830 ~ 6889299 (+) True G40780
TU54938 lncRNA downstream 487415 6951786 ~ 6953565 (+) True G40783
XM_022669530.1 mRNA upstream 628047 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 629048 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 630259 5814514 ~ 5833875 (+) False lims1
XM_022670144.1 mRNA upstream 684860 5762651 ~ 5779274 (+) True adamts17
XM_015602438.2 mRNA upstream 713769 5728545 ~ 5750365 (+) False cers3
XM_007252577.2 mRNA downstream 413401 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA downstream 413401 6877772 ~ 7013787 (+) False pcdh17
XM_007252576.3 mRNA downstream 1637904 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 1897466 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 1917885 8382256 ~ 8400857 (+) True tmem44
TU54660 other upstream 1153327 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 2328549 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 3652638 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 3725917 2735596 ~ 2738217 (+) False LOC103029230
TU53709 other upstream 4677898 1783424 ~ 1786236 (+) False muc2
TU54910 other downstream 68994 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 1362152 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 3531382 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 3827966 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 4290838 10755209 ~ 10755281 (+) True trnam-cau_21

Expression Profile