RNA id: TU54913


Basic Information

Item Value
RNA id TU54913
length 250
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G40759
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 6540706 ~ 6540955 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtgtgatgtaaaatggaggtagtgcagttgaacacaatagacagcgaacaccagttgatgtgcataaagtaaggataaggataactgatgtcagccatacagaaagtgcaaacacagttatataataatttaaatttagcagtgcaaatgatacgtaaacagtagatgaatgaactagtgaatgaactactagtgcaaaatagggtagaactataaaaatagtgttatgggCATCAGCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54901 lncRNA upstream 31396 6509072 ~ 6509310 (+) True G40749
TU54892 lncRNA upstream 76335 6464134 ~ 6464371 (+) True G40742
TU54854 lncRNA upstream 342470 6197959 ~ 6198236 (+) True G40709
TU54842 lncRNA upstream 411500 6094309 ~ 6129206 (+) True G40697
TU54840 lncRNA upstream 448424 6091871 ~ 6092282 (+) True G40695
TU54917 lncRNA downstream 75011 6615966 ~ 6616168 (+) True G40763
TU54935 lncRNA downstream 347875 6888830 ~ 6889299 (+) True G40780
TU54938 lncRNA downstream 410831 6951786 ~ 6953565 (+) True G40783
TU54939 lncRNA downstream 413195 6954150 ~ 6999091 (+) True G40784
TU54949 lncRNA downstream 530861 7071816 ~ 7072047 (+) True G40794
XM_022669530.1 mRNA upstream 704619 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 705620 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 706831 5814514 ~ 5833875 (+) False lims1
XM_022670144.1 mRNA upstream 761432 5762651 ~ 5779274 (+) True adamts17
XM_015602438.2 mRNA upstream 790341 5728545 ~ 5750365 (+) False cers3
XM_007252577.2 mRNA downstream 336817 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA downstream 336817 6877772 ~ 7013787 (+) False pcdh17
XM_007252576.3 mRNA downstream 1561320 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 1820882 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 1841301 8382256 ~ 8400857 (+) True tmem44
TU54910 other upstream 7032 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 1229899 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 2405121 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 3729210 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 3802489 2735596 ~ 2738217 (+) False LOC103029230
XR_001518717.2 other downstream 1285568 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 3454798 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 3751382 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 4214254 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 5030271 11571226 ~ 11580329 (+) True G41828

Expression Profile