RNA id: TU54935


Basic Information

Item Value
RNA id TU54935
length 410
lncRNA type intronic
GC content 0.42
exon number 2
gene id G40780
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 6888830 ~ 6889299 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttACTCTGTTATACCTTACTCtccctcgctctgcctcacccaagctcattctacCTCACTCAATCTACAttgctctaccttgctctacctcactctgcctcgttCTACCTTACACTATCTTGCTCTACTTTACTCtttctcattctacctcactctacctcactctatctcaatCTACTTTACTCTGTTCTACACTTTACTTTGATATACCCCACTCTATCTCAGTTGATCTCACTCTGCTCTACCGTACTCTTCCTCATTCTGCCTCAGATCTACCaatctaccacactctgccaAACTTTACCTCAGTCTACCTCTCGGTCTACCACTTAagctcactctgcttcactttacttttataaaccttattctacctctctctatttcactcCATCTCAATCAATCtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54917 lncRNA upstream 272662 6615966 ~ 6616168 (+) True G40763
TU54913 lncRNA upstream 347875 6540706 ~ 6540955 (+) True G40759
TU54901 lncRNA upstream 379520 6509072 ~ 6509310 (+) True G40749
TU54892 lncRNA upstream 424459 6464134 ~ 6464371 (+) True G40742
TU54854 lncRNA upstream 690594 6197959 ~ 6198236 (+) True G40709
TU54938 lncRNA downstream 62487 6951786 ~ 6953565 (+) True G40783
TU54939 lncRNA downstream 64851 6954150 ~ 6999091 (+) True G40784
TU54949 lncRNA downstream 182517 7071816 ~ 7072047 (+) True G40794
TU54994 lncRNA downstream 593459 7482758 ~ 7483102 (+) True G40838
TU54995 lncRNA downstream 606030 7495329 ~ 7495560 (+) True G40839
XM_022669530.1 mRNA upstream 1052743 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 1053744 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 1054955 5814514 ~ 5833875 (+) False lims1
XM_022670144.1 mRNA upstream 1109556 5762651 ~ 5779274 (+) True adamts17
XM_015602438.2 mRNA upstream 1138465 5728545 ~ 5750365 (+) False cers3
XM_007252576.3 mRNA downstream 1212976 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 1472538 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 1492957 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 1570216 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 1622805 8512104 ~ 8523308 (+) True LOC103028988
TU54910 other upstream 355156 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 1578023 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 2753245 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 4077334 2689967 ~ 2811496 (+) False LOC103029230
XR_001518717.2 other downstream 937224 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 3106454 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 3403038 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 3865910 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 4681927 11571226 ~ 11580329 (+) True G41828

Expression Profile