RNA id: TU54938



Basic Information


Item Value
RNA id TU54938
length 335
lncRNA type intronic
GC content 0.45
exon number 2
gene id G40783
representative True

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 6951786 ~ 6953565 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AAAACGGAGATCTTGGGGTTGAAACAACATACagtggttgttcggatcagcaattaaatcagttaaatatatcatatagcaggtGAACACACTGATATTTGAagtgagaagtgaaatgaagttttggggttacacagctttctgcaaccgaacagcagggggcgcccgacctgtggtggcttcacttttgagagacgatgctctgtccagctatacacagtctatggggtATCGCAACCGACCTtagtcacaagataacaccacaGAACTTATACAGAAGTAGCCCGAAGCCTGAAACAAGCCATCCAGTGAGGTAACACTTGACTGTGATCAGT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU54935 lncRNA upstream 62487 6888830 ~ 6889299 (+) True G40780
TU54917 lncRNA upstream 335618 6615966 ~ 6616168 (+) True G40763
TU54913 lncRNA upstream 410831 6540706 ~ 6540955 (+) True G40759
TU54901 lncRNA upstream 442476 6509072 ~ 6509310 (+) True G40749
TU54892 lncRNA upstream 487415 6464134 ~ 6464371 (+) True G40742
TU54939 lncRNA downstream 585 6954150 ~ 6999091 (+) True G40784
TU54949 lncRNA downstream 118251 7071816 ~ 7072047 (+) True G40794
TU54994 lncRNA downstream 529193 7482758 ~ 7483102 (+) True G40838
TU54995 lncRNA downstream 541764 7495329 ~ 7495560 (+) True G40839
TU54998 lncRNA downstream 555613 7509178 ~ 7512682 (+) True G40842
XM_022669530.1 mRNA upstream 1115699 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 1116700 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 1117911 5814514 ~ 5833875 (+) False lims1
XM_022670144.1 mRNA upstream 1172512 5762651 ~ 5779274 (+) True adamts17
XM_015602438.2 mRNA upstream 1201421 5728545 ~ 5750365 (+) False cers3
XM_007252576.3 mRNA downstream 1148710 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 1408272 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 1428691 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 1505950 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 1558539 8512104 ~ 8523308 (+) True LOC103028988
TU54910 other upstream 418112 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 1640979 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 2816201 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 4140290 2689967 ~ 2811496 (+) False LOC103029230
XR_001518717.2 other downstream 872958 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 3042188 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 3338772 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 3801644 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 4617661 11571226 ~ 11580329 (+) True G41828

Expression Profile


TU54938 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU54938 Expression in each Bioproject

Bar chart with 6 bars.
TU54938 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.