RNA id: TU54949


Basic Information

Item Value
RNA id TU54949
length 232
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G40794
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 7071816 ~ 7072047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgtctcacatttaccaactaacatcaaacacaacacaaccacccgtctcacatttaccaactaacatcaaacacaccacaaccacccgtctcacatttaccaactaacatcaaacacaacacaaccacccgtctcccatttaccaactaacatcaaacacaacacaaccacccgtctcacatttaccaactaacatcaaacacaacacaaccacccgtctcacatttaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54939 lncRNA upstream 72725 6954150 ~ 6999091 (+) True G40784
TU54938 lncRNA upstream 118251 6951786 ~ 6953565 (+) True G40783
TU54935 lncRNA upstream 182517 6888830 ~ 6889299 (+) True G40780
TU54917 lncRNA upstream 455648 6615966 ~ 6616168 (+) True G40763
TU54913 lncRNA upstream 530861 6540706 ~ 6540955 (+) True G40759
TU54994 lncRNA downstream 410711 7482758 ~ 7483102 (+) True G40838
TU54995 lncRNA downstream 423282 7495329 ~ 7495560 (+) True G40839
TU54998 lncRNA downstream 437131 7509178 ~ 7512682 (+) True G40842
TU55068 lncRNA downstream 640287 7712334 ~ 7712583 (+) True G40902
TU55076 lncRNA downstream 716403 7788450 ~ 7789606 (+) True G40910
XM_007252577.2 mRNA upstream 58029 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 58029 6877772 ~ 7013787 (+) False pcdh17
XM_022669530.1 mRNA upstream 1235729 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 1236730 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 1237941 5814514 ~ 5833875 (+) False lims1
XM_007252576.3 mRNA downstream 1030228 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 1289790 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 1310209 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 1387468 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 1440057 8512104 ~ 8523308 (+) True LOC103028988
TU54910 other upstream 538142 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 1761009 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 2936231 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 4260320 2689967 ~ 2811496 (+) False LOC103029230
XR_001518717.2 other downstream 754476 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 2923706 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 3220290 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 3683162 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 4499179 11571226 ~ 11580329 (+) True G41828

Expression Profile