RNA id: TU54995


Basic Information

Item Value
RNA id TU54995
length 232
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G40839
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 7495329 ~ 7495560 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattgtttattcattttcttctgATCCCAGAGACtctaaaaaagatggacgccgtgtctccgttcccattcattcaatgaaaataaagCCATGTTcggccatgttggcgatcctgaaacccgagtctgtagagcgcagtagagaccagaggagagagaaagactgtggagagacagcctactcatttaaataaccccgcccctgagggctgcctctacagagctatacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54994 lncRNA upstream 12227 7482758 ~ 7483102 (+) True G40838
TU54949 lncRNA upstream 423282 7071816 ~ 7072047 (+) True G40794
TU54939 lncRNA upstream 496238 6954150 ~ 6999091 (+) True G40784
TU54938 lncRNA upstream 541764 6951786 ~ 6953565 (+) True G40783
TU54935 lncRNA upstream 606030 6888830 ~ 6889299 (+) True G40780
TU54998 lncRNA downstream 13618 7509178 ~ 7512682 (+) True G40842
TU55068 lncRNA downstream 216774 7712334 ~ 7712583 (+) True G40902
TU55076 lncRNA downstream 292890 7788450 ~ 7789606 (+) True G40910
TU55082 lncRNA downstream 472556 7968116 ~ 7968423 (+) True G40916
TU55117 lncRNA downstream 668151 8163711 ~ 8164067 (+) True G40947
XM_007252577.2 mRNA upstream 481542 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 481542 6877772 ~ 7013787 (+) False pcdh17
XM_022669530.1 mRNA upstream 1659242 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 1660243 5814514 ~ 5835086 (+) False lims1
XM_007252576.3 mRNA downstream 606715 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 866277 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 886696 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 963955 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 1016544 8512104 ~ 8523308 (+) True LOC103028988
TU54910 other upstream 961655 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 2184522 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 3359744 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 4683833 2689967 ~ 2811496 (+) False LOC103029230
XR_001518717.2 other downstream 330963 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 2500193 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 2796777 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 3259649 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 4075666 11571226 ~ 11580329 (+) True G41828

Expression Profile