RNA id: TU55076


Basic Information

Item Value
RNA id TU55076
length 307
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G40910
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 7788450 ~ 7789606 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagcaaccacttagcaacaccttagcaaccacctagcaactgcttaggaacaccttagcaaccacctagcaactgcttagcaacaccttagcaaccacgacagacaccatagcaaccaccacagataccacagcaacaccttagcaaccacctagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaaccacctagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55068 lncRNA upstream 75867 7712334 ~ 7712583 (+) True G40902
TU54998 lncRNA upstream 275768 7509178 ~ 7512682 (+) True G40842
TU54995 lncRNA upstream 292890 7495329 ~ 7495560 (+) True G40839
TU54994 lncRNA upstream 305348 7482758 ~ 7483102 (+) True G40838
TU54949 lncRNA upstream 716403 7071816 ~ 7072047 (+) True G40794
TU55082 lncRNA downstream 178510 7968116 ~ 7968423 (+) True G40916
TU55117 lncRNA downstream 374105 8163711 ~ 8164067 (+) True G40947
TU55119 lncRNA downstream 375346 8164952 ~ 8165271 (+) True G40949
TU55120 lncRNA downstream 375785 8165391 ~ 8165661 (+) True G40950
TU55122 lncRNA downstream 378173 8167779 ~ 8169537 (+) True G40952
XM_007252577.2 mRNA upstream 774663 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 774663 6877772 ~ 7013787 (+) False pcdh17
XM_022669530.1 mRNA upstream 1952363 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 1953364 5814514 ~ 5835086 (+) False lims1
XM_007252576.3 mRNA downstream 312669 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 572231 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 592650 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 669909 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 722498 8512104 ~ 8523308 (+) True LOC103028988
TU54910 other upstream 1254776 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 2477643 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 3652865 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 4976954 2689967 ~ 2811496 (+) False LOC103029230
XR_001518717.2 other downstream 36917 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 2206147 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 2502731 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 2965603 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 3781620 11571226 ~ 11580329 (+) True G41828

Expression Profile