RNA id: TU55117


Basic Information

Item Value
RNA id TU55117
length 357
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G40947
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8163711 ~ 8164067 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGGACTAGTATCATAGGACATGGGACTAGTATCATAGGACATGGGACTAGTATCGTTGAACTAGTATCATAGGACATGGGACTAGTATCATAGGACATGGGACTAGTATCGTTGAACTAGTATCATAGGACATGGGACTAGTATCATAGGACATGGGACTAGTATCATAGGACATGGGACTAGTATCAAGGGACTAGTATCATAGGACATGGGACTAGTATCATGGGACTAGTATCATAGGACATGGGACTAGTATCGTTGAACTAGTATCATAGGACATGGGACTAGTATCATAGGACATGGGACTAGTATCATAGGACATGGGACTAGTATCATAGGACATGGGACTAGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55082 lncRNA upstream 195288 7968116 ~ 7968423 (+) True G40916
TU55076 lncRNA upstream 374105 7788450 ~ 7789606 (+) True G40910
TU55068 lncRNA upstream 451128 7712334 ~ 7712583 (+) True G40902
TU54998 lncRNA upstream 651029 7509178 ~ 7512682 (+) True G40842
TU54995 lncRNA upstream 668151 7495329 ~ 7495560 (+) True G40839
TU55119 lncRNA downstream 885 8164952 ~ 8165271 (+) True G40949
TU55120 lncRNA downstream 1324 8165391 ~ 8165661 (+) True G40950
TU55122 lncRNA downstream 3712 8167779 ~ 8169537 (+) True G40952
XR_002649927.1 lncRNA downstream 245395 8409462 ~ 8454415 (+) True LOC111192502
TU55147 lncRNA downstream 245583 8409650 ~ 8454348 (+) False LOC111192502
XM_007252576.3 mRNA upstream 753 8102275 ~ 8162958 (+) True xxylt1
XM_007252577.2 mRNA upstream 1149924 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 1149924 6877772 ~ 7013787 (+) False pcdh17
XM_022669530.1 mRNA upstream 2327624 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 2328625 5814514 ~ 5835086 (+) False lims1
XM_022669536.1 mRNA downstream 197770 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 218189 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 295448 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 348037 8512104 ~ 8523308 (+) True LOC103028988
XM_022669538.1 mRNA downstream 387903 8551970 ~ 8636478 (+) True col6a1
XR_001518717.2 other upstream 336797 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 1630037 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 2852904 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4028126 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 5425494 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1831686 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 2128270 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 2591142 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 3407159 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 3590276 11754343 ~ 11757209 (+) False tmem221

Expression Profile