RNA id: TU55122


Basic Information

Item Value
RNA id TU55122
length 1415
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G40952
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8167779 ~ 8169537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcccaattagaacagtgggatctaacaacAGAGTAAAATACTACTATTTAGAGGTCAAAGTTTAAAcagaacacaaaatgaaccGCTTTGtaacaccaatctttacattttaactaataaaactacatattgcAATACTTTGATATGTCAACATTGTCTTTTGCCCCTACGGCCTAAAGtgtgtgcaaaaaaaagttctgcACTGCATCTAGCCAATCAAAGAAGAGCAGGCTGGTTTGTCATAAGCATCAAACACAATTCAGATGCCTGTCAAACCTAAAGGAACCATGGCGCAGAATGATCGGGAGATcgatggttcgaatcctgggcatgcagcttgccatcagaagccagagccccgagagagcgcacattagccttgctctctctgggtgggtagatggagctcttctCCTTCATTACTCGTagagcacaaggcatctgtgagctgatgtattggaaccgaatCGCTGTGCTTCGCTTTGCTCCGAGCAATGCTGTATCAACAACTAATTCtcaaaaatgttaatgtaaactGTGTAAATGCATTGTCTGCCATGAAGAGGCAGctcaaaaatatgaataaaatatgctGTTTAGTCTAAATCTGAAGTTGATGACTTGTCTTTGTGAGCAAACATGTTAGAGAACCAAGTTAAGAACCAagatttataaagttttattttatattatgtatcaaAGAACTTTAGACAACACcttattcctgaaattaaacTCAAGCACATCAGTGGAGTCTCCTGTGGATCTTAGATCAAGACTTTGGGTCTGATTTAAAGACTTGAATAAACCAATCGAAACCACTCTTtctttaattatgtttataaatatgttaagtCTATAATTTTCCTGTTTTAAGGCCCTTTCACACcaagtatgattttttttcggCAATcaacaagtattttttttttttttacgaatatTGTATATCGTTCACACCATTCAGGCCAACACATttacagtatcgcaatatatcattatatattgaATCGAAAGCTCTATAGCGTGATATGCACCGTATCGCCAAGTGCTGGTCAATACAGAGCCCTAACACTCCAGATAAActtgtagataaaaaaaaatgctttcagaCAGTCTCTTGTCTCTTTGTGCGGGAAAGACTGCATTTAATTACTAGTGCATTtccaaaaatttgaatatcattgaaaatatattttattttattaattcagtaATGCTTATTTACATGCTTCCCTTTggtgacaacttttatagagatgcagatttcattttccagcaggatttggcacactgcccacactaccaaatgtaccaatttgttttttataatattctaacttttgagacacagatttttgagtttttattgactgtaagccataattgaaaatgcatttttttaaaatgtgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55120 lncRNA upstream 2118 8165391 ~ 8165661 (+) True G40950
TU55119 lncRNA upstream 2508 8164952 ~ 8165271 (+) True G40949
TU55117 lncRNA upstream 3712 8163711 ~ 8164067 (+) True G40947
TU55082 lncRNA upstream 199356 7968116 ~ 7968423 (+) True G40916
TU55076 lncRNA upstream 378173 7788450 ~ 7789606 (+) True G40910
XR_002649927.1 lncRNA downstream 239925 8409462 ~ 8454415 (+) True LOC111192502
TU55147 lncRNA downstream 240113 8409650 ~ 8454348 (+) False LOC111192502
TU55167 lncRNA downstream 330226 8499763 ~ 8500064 (+) True G40987
TU55165 lncRNA downstream 331377 8500914 ~ 8502742 (+) True G40985
TU55166 lncRNA downstream 333333 8502870 ~ 8504310 (+) True G40986
XM_007252576.3 mRNA upstream 4821 8102275 ~ 8162958 (+) True xxylt1
XM_007252577.2 mRNA upstream 1153992 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 1153992 6877772 ~ 7013787 (+) False pcdh17
XM_022669530.1 mRNA upstream 2331692 5814515 ~ 5836087 (+) True lims1
XM_022669528.1 mRNA upstream 2333904 5814514 ~ 5833875 (+) False lims1
XM_022669536.1 mRNA downstream 192300 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 212719 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 289978 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 342567 8512104 ~ 8523308 (+) True LOC103028988
XM_022669538.1 mRNA downstream 382433 8551970 ~ 8636478 (+) True col6a1
XR_001518717.2 other upstream 340865 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 1634105 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 2856972 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4032194 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 5429562 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1826216 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 2122800 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 2585672 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 3401689 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 3584806 11754343 ~ 11757209 (+) False tmem221

Expression Profile