RNA id: TU55163


Basic Information

Item Value
RNA id TU55163
length 3353
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G40984
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8504618 ~ 8511612 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctttttttgctgccTGCGTGTATCTGTTTCTGAAAGCTGAAagtgtattttgtatatttaataacTCTTACTCAAACCTGACTTCAGAATCAtcagctgtctctctctgtattttctCTGTTTGGGGCCTtggttaattttattatttttatttgataatttttCTCTCTAAATAAGGGCTGTAGATGAGTTCCCCTCATTCTTATCTTTCGGTACTGTTTGAATGTTTCCTTTATTCTAAATAATCATGTTCATCTGTCTTTCTGTGATGTCCGTGTATCTGTCctctgatgatgttttaagaTCACGCAGAATATGCTGGGCATTTCCGCAGCGATGGATTGGTTTaaattaattactgtaattaaagaatAATTGTAGATGATATGAGCTAAATTGATATGATCCTCTATAAAATCGACATATTATAATTAATCAGCGTTCAGAATCCAGCCCATTCATCTCAATGTGTTATGCATCGTGTAAAGTCCAGGAGACCctgaaaaaaaagttcttaaaagtcattttttatttaaatatttataaaaatgcataagggattctgcagaaaaaataaaataaaaattgccaAAATGTCATCATGCACTGGATTTGATCTGGACCAGAACCACAATCATGACAATCCCTTGGGCAGGTTCTCGCATGTAAGCAGCGATTTTGTGTTTGGGGTAACTTTTAagttttagggtatttttttttcttcttgtttttgtttttttcttctgttttttttttcgtcttcATCTGTACGAGTGATAAAGAGGTGGTTCGCAAAAAAACGCTACTCAAAGCCCCCAGACACACCATGtaaaatttaaaacttaaaaaaaaaaaaaataaataactccaAATCTATTTAGCTCCAATTTAACTCAAAccacacagagatacagattTAGATTAATTGATGTATTGATTAATTTATAGCCCGACAGAGTGTATAATATCAAGGGTACCATCCAGAAGAAGGGGGCACAGAGAACTGGTTTTAGAACTACTGATATAATGAGGttcattttccttttatttaaaaagaagaagaaaaaaaacccaaacctGCACCTTAATGCTTCATATCAAATGTTGTGACTTGCATACCTGCAGAATAAATGATTTTTTCTTGTTGTGGGTTTTTTAAAGGTAGCTTTCACACCTTCTgtaacttgattttttttgtctttttttttttttgtcaatccGGATCATCTGAATCTTGAATCTGAAATTtaatctggtttctttgcagtgtgaaagcacaaAGTTTCAAATCATTAAATCACCTTTAcctaaacaatagaagaagaaaaagatctGGTGTTGCGCCAGAAATCAGACACTATGGTCTAGATGTGCAGTAAGTAAGCGCACAACTGATTAATGATGTTgatggtgattctgtatctactgtaactgtagatttatccttatttataaacagaaataaaatgaatctgTTACATAACACAGTTTAACAAACACTTCAGACTTGGTTCAGAATCTGATTCAGatttttcaggtgtgaaaatgcccttaaacACACCCTTCTTTTGCTGGTATGCTTACACAGCTCGCTTCTATAAAGGTACAGATAATAATCAGCTGAGCATGCTCTGATAGACGAGGGGTcgttttggttttgtttgttttttcggTCCTGCGAATTACGCAGGCTGTGAAATGTTgttgatatattaaaaaataatgcaatgttGCGCGTAGACATACGTAGAAATGCTTCTAAAGATGACGGCTGTCTTCAGTCAAGCATTGTCTTTTACGCTCTTCACACTCTTCTTCTGCATTTGGTCATAAATGTACATTTAGGAtatacgttcacacagcaggtcaaTCTGCCCTAAATCAGATTCAAATATCAGATTCAATTTAGGCTGTTTACACTACCCTTTAACTGTGATTTTTAGTGTAACTGTATGTCTGATACTGTAagtcagattattattattattcagactAATGCACTGCAGAGCtgcgcttcacgtgaagtttcggtttcatcttctccagcattACAGGAGTTCCAATGGCTGCAGCTGGACTTATCACCAAAAATGCATTACAGCTCACATTAAAAAAGCTATGCTGTTTGACCACGCCCATTTCTTCTTCAGTTCATGTCCTAAATCTGACTATTTAGACCAAGTCTCATTGTCACAAACTGGATATATCATATTTCAATACCATCTACagatctgtaaaaaaatgaagagagcactttattcagtttctgaatcagtttctctgattttgctattcataggtttatgtttgagtaaaatgaacataattgttttattctataaactacagacaacatttagaaaacaactaaaataagaaaattaccttaaagacctcaaataatgcaaagacaaaacaggatcatattcataaagttttaagagtttagaaaacTAATGTTTCAtgctttgcatgttctcctccaccagtcttacacactgcttttagatcaTTTTATGCTActtcactcctggtgtaaaaattcaagcggttcagattggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcataatttttaagtgctctcttatttttttccaaatcgaaaaatatcagaaaacatataaataatatcagtattaatattcagtgtgtgtttgttttttcacactgccacacatacagtatatcgcATCTTTATCAGGATTGTGATTGAAATGTTATGAGATTTGGGATTTGGGCCattttttacctgctgtgtgaacgcagATTTAGAGTGCACTCGTCCAGATCTTAAATGCTTCGCATAAAACATGcagattttattgatttgatatATTTTCATGTGAGAATCGGCGAATCTGCACAGATCTGTGTACAATACAATAACACCTGTTGATtcctgcttgtttgtttgtttgttttattttttctttgtttatttgtactgAACATGTACATTTGGACATGCCTACAAGACAATATTGGgtgattttgttgttgtttttttattattattatttttaagatcaatttgtttaatttcCTCAGGGAAAATCATATTTGTTACAAATAAAttgactgaataaataaaagaatgaaaaaaataagttgtCGGTCAGTATCTTGGGCATCATTTGTCTaacaaacattacatttttgatccataaacagagacaaaaaaaaatcaaacccattttttattttggaaatcCCCCTTTTTTGTAGAAAATtgtaaatgacatttttatcatctgtaatttattttatatttatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55166 lncRNA upstream 1570 8502870 ~ 8504310 (+) True G40986
TU55165 lncRNA upstream 3138 8500914 ~ 8502742 (+) True G40985
TU55167 lncRNA upstream 5816 8499763 ~ 8500064 (+) True G40987
XR_002649927.1 lncRNA upstream 51465 8409462 ~ 8454415 (+) True LOC111192502
TU55171 lncRNA downstream 12029 8521281 ~ 8522409 (+) True G40989
TU55172 lncRNA downstream 14029 8523281 ~ 8524313 (+) False LOC103028988
TU55239 lncRNA downstream 209433 8718685 ~ 8742743 (+) False LOC103027717
TU55236 lncRNA downstream 253897 8763149 ~ 8765880 (+) True G41040
XR_002649928.1 lncRNA downstream 260802 8770054 ~ 8771261 (+) True LOC111192503
XM_022670147.1 mRNA upstream 6941 8459515 ~ 8498939 (+) True atp13a3
XM_022670142.1 mRNA upstream 105023 8382256 ~ 8400857 (+) True tmem44
XM_022669536.1 mRNA upstream 128055 8361837 ~ 8377825 (+) True lsg1
XM_007252576.3 mRNA upstream 342922 8102275 ~ 8162958 (+) True xxylt1
XM_015606694.2 mRNA upstream 1492093 6877772 ~ 7013787 (+) False pcdh17
XM_022669537.1 mRNA downstream 2852 8512104 ~ 8523308 (+) True LOC103028988
XM_022669538.1 mRNA downstream 42718 8551970 ~ 8636478 (+) True col6a1
XM_022669540.1 mRNA downstream 151747 8660999 ~ 8693477 (+) False col6a2
XM_022669539.1 mRNA downstream 151749 8661001 ~ 8701071 (+) True col6a2
XM_022669541.1 mRNA downstream 193190 8702442 ~ 8716742 (+) True LOC103028050
XR_001518717.2 other upstream 678966 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 1972206 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3195073 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4370295 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 5767663 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1486501 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1783085 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 2245957 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 3061974 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 3245091 11754343 ~ 11757209 (+) False tmem221

Expression Profile