Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022669537.1 |
| length | 1464 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 12 |
| gene id | LOC103028988 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035901.1 |
| NCBI id | CM008304.1 |
| chromosome length | 40584741 |
| location | 8512104 ~ 8524313 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0019441 | tryptophan catabolic process to kynurenine | biological_process |
| GO:0019442 | tryptophan catabolic process to acetyl-CoA | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004833 | tryptophan 2,3-dioxygenase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| K00453 | TDO2, kynA; tryptophan 2,3-dioxygenase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU55164 | lncRNA | upstream | 492 | 8504618 ~ 8511612 (+) | False | G40984 |
| TU55163 | lncRNA | upstream | 2852 | 8505880 ~ 8509252 (+) | True | G40984 |
| TU55166 | lncRNA | upstream | 7794 | 8502870 ~ 8504310 (+) | True | G40986 |
| TU55165 | lncRNA | upstream | 9362 | 8500914 ~ 8502742 (+) | True | G40985 |
| TU55167 | lncRNA | upstream | 12040 | 8499763 ~ 8500064 (+) | True | G40987 |
| TU55239 | lncRNA | downstream | 195377 | 8718685 ~ 8742743 (+) | False | LOC103027717 |
| TU55236 | lncRNA | downstream | 239841 | 8763149 ~ 8765880 (+) | True | G41040 |
| XR_002649928.1 | lncRNA | downstream | 246746 | 8770054 ~ 8771261 (+) | True | LOC111192503 |
| TU55319 | lncRNA | downstream | 281676 | 8804984 ~ 8805203 (+) | True | G41087 |
| TU55330 | lncRNA | downstream | 405154 | 8928462 ~ 8935486 (+) | False | LOC103022991 |
| XM_022670147.1 | mRNA | upstream | 13165 | 8459515 ~ 8498939 (+) | True | atp13a3 |
| XM_022670142.1 | mRNA | upstream | 111247 | 8382256 ~ 8400857 (+) | True | tmem44 |
| XM_022669536.1 | mRNA | upstream | 134279 | 8361837 ~ 8377825 (+) | True | lsg1 |
| XM_007252576.3 | mRNA | upstream | 349146 | 8102275 ~ 8162958 (+) | True | xxylt1 |
| XM_007252577.2 | mRNA | upstream | 1498317 | 6877772 ~ 7013787 (+) | True | pcdh17 |
| XM_022669538.1 | mRNA | downstream | 28662 | 8551970 ~ 8636478 (+) | True | col6a1 |
| XM_022669540.1 | mRNA | downstream | 137691 | 8660999 ~ 8693477 (+) | False | col6a2 |
| XM_022669539.1 | mRNA | downstream | 137693 | 8661001 ~ 8701071 (+) | True | col6a2 |
| XM_022669541.1 | mRNA | downstream | 179134 | 8702442 ~ 8716742 (+) | True | LOC103028050 |
| XM_022669542.1 | mRNA | downstream | 179309 | 8702617 ~ 8716742 (+) | False | LOC103028050 |
| XR_001518717.2 | other | upstream | 685190 | 7826523 ~ 7826914 (+) | True | LOC107197696 |
| TU54910 | other | upstream | 1978430 | 6533365 ~ 6533674 (+) | True | G40756 |
| TU54660 | other | upstream | 3201297 | 5308546 ~ 5310807 (+) | False | snrpa1 |
| TU54378 | other | upstream | 4376519 | 4134510 ~ 4135585 (+) | True | G40318 |
| TU53995 | other | upstream | 5773887 | 2735596 ~ 2738217 (+) | False | LOC103029230 |
| TU55733 | other | downstream | 1472445 | 9995753 ~ 10005398 (+) | False | LOC103037553 |
| trnar-ucg_1 | other | downstream | 1769029 | 10292337 ~ 10292409 (+) | True | trnar-ucg_1 |
| trnam-cau_21 | other | downstream | 2231901 | 10755209 ~ 10755281 (+) | True | trnam-cau_21 |
| TU56242 | other | downstream | 3047918 | 11571226 ~ 11580329 (+) | True | G41828 |
| TU56269 | other | downstream | 3231035 | 11754343 ~ 11757209 (+) | False | tmem221 |
