RNA id: TU55330


Basic Information

Item Value
RNA id TU55330
length 534
lncRNA type sense_over
GC content 0.35
exon number 2
gene id LOC103022991
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8921928 ~ 8935486 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttattattattattttttttattttaaataatgcagcCGACGGCTGAGCCCCGTTTGCCAAATAAGTGGACCACTAAATAAGTAGGTTATATCAGCAGTAAACCATGCATACTTCATAACTGATGAGACAAAACAGCTTGTGTTAGCGGCAGTGGGTGCACACCATCCTCCTGCTACAAGAATATAATTGTGACTGGATTTTGATCGTTATAGCCTTATGTGATTATTTGAGCTGGTCAACACGGTACTGATGTTTTGCCAGCTCGTTCTGCGGCCGTTTATAACATCAGCTGACAGACCaacagataaatataaatatagtgaGGATACTATATTTTTTAGTTACTTGAAGTGTAACAAAAGTTTGACCTCAGTGAGAAGCTTGGGTTTCCTTGTTTGACTACTATTTGTCATATTTAAACATCCACATAAAACCATTATTGATAACCTGTtgtgtattttactttttttaatggtttctaAAACTGTAGTGCATTTGGACAGGTGGATCATATTCCcttcagaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55319 lncRNA upstream 123259 8804984 ~ 8805203 (+) True G41087
XR_002649928.1 lncRNA upstream 157201 8770054 ~ 8771261 (+) True LOC111192503
TU55236 lncRNA upstream 162582 8763149 ~ 8765880 (+) True G41040
TU55239 lncRNA upstream 185719 8718685 ~ 8742743 (+) False LOC103027717
TU55172 lncRNA upstream 404149 8523281 ~ 8524313 (+) False LOC103028988
TU55337 lncRNA downstream 1932 8937418 ~ 8942071 (+) True G41099
TU55334 lncRNA downstream 19317 8954803 ~ 8988103 (+) True G41097
TU55382 lncRNA downstream 195623 9131109 ~ 9163752 (+) True G41127
TU55386 lncRNA downstream 229523 9165009 ~ 9168734 (+) True G41131
TU55394 lncRNA downstream 270835 9206321 ~ 9232010 (+) True G41136
XM_022669548.1 mRNA upstream 8718 8828088 ~ 8919744 (+) True LOC103026226
XM_022670148.1 mRNA upstream 165670 8718560 ~ 8762792 (+) True LOC103027717
XM_022669541.1 mRNA upstream 211720 8702442 ~ 8716742 (+) True LOC103028050
XM_022669542.1 mRNA upstream 211720 8702617 ~ 8716742 (+) False LOC103028050
XM_022669539.1 mRNA upstream 227391 8661001 ~ 8701071 (+) True col6a2
XM_022669549.1 mRNA downstream 7356 8942842 ~ 8986586 (+) True LOC103025921
XM_022669551.1 mRNA downstream 7356 8942842 ~ 8986586 (+) False LOC103025921
XM_022669550.1 mRNA downstream 7356 8942842 ~ 8986586 (+) False LOC103025921
XM_022669552.1 mRNA downstream 7356 8942842 ~ 8986586 (+) False LOC103025921
XM_022669560.1 mRNA downstream 62664 8998150 ~ 9104845 (+) True mcf2l2
XR_001518717.2 other upstream 1101548 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2394788 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3617655 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4792877 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6190245 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1060267 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1356851 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1819723 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2635740 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2818857 11754343 ~ 11757209 (+) False tmem221

Expression Profile