RNA id: TU55398


Basic Information

Item Value
RNA id TU55398
length 231
lncRNA type intronic
GC content 0.47
exon number 2
gene id G41137
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9251517 ~ 9280561 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttggcccgtttttctgcgctacaactgaacactctctccgcttttagactctttagcccgtttttctgcgctacaactgaacactctctccgcttttagactctttggcccgtttttctgcgctacaactgaacactctctccgcttttagactctttagcccgtttttctgcgctacaactgaacactctctccgcttttagactctttagcctgtttttctgcgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55394 lncRNA upstream 19507 9206321 ~ 9232010 (+) True G41136
TU55386 lncRNA upstream 82783 9165009 ~ 9168734 (+) True G41131
TU55382 lncRNA upstream 87765 9131109 ~ 9163752 (+) True G41127
TU55334 lncRNA upstream 263414 8954803 ~ 8988103 (+) True G41097
TU55337 lncRNA upstream 309446 8937418 ~ 8942071 (+) True G41099
TU55511 lncRNA downstream 50567 9302625 ~ 9302915 (+) True G41235
TU55516 lncRNA downstream 85790 9337848 ~ 9338218 (+) True G41240
TU55517 lncRNA downstream 98358 9350416 ~ 9350667 (+) True G41241
TU55518 lncRNA downstream 102460 9354518 ~ 9354794 (+) True G41242
TU55543 lncRNA downstream 350900 9602958 ~ 9603564 (+) True G41262
XM_022669554.1 mRNA upstream 64390 9129858 ~ 9187127 (+) False LOC103043643
XM_022669572.1 mRNA downstream 174111 9426169 ~ 9713508 (+) True LOC111192504
XM_022669571.1 mRNA downstream 278599 9530657 ~ 9713508 (+) False LOC111192504
XM_022669573.1 mRNA downstream 278599 9530657 ~ 9713507 (+) False LOC111192504
XM_022669574.1 mRNA downstream 278599 9530657 ~ 9713507 (+) False LOC111192504
XM_007237353.3 mRNA downstream 694134 9946192 ~ 9953281 (+) True LOC103039853
XR_001518717.2 other upstream 1424603 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2717843 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3940710 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 5115932 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6513300 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 743695 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1040279 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1503151 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2319168 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2502285 11754343 ~ 11757209 (+) False tmem221

Expression Profile