RNA id: TU55511


Basic Information

Item Value
RNA id TU55511
length 291
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G41235
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9302625 ~ 9302915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagaggttggacaatgaaactgaaacacctggttttagagcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgtttttaggatacaatctgggttagcacccgaacatccctttcagacagcttcctcttacagcatccacagttaatcctgttggatgtggttggttcttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55396 lncRNA upstream 22064 9251517 ~ 9280561 (+) True G41137
TU55398 lncRNA upstream 50567 9251517 ~ 9252058 (+) False G41137
TU55394 lncRNA upstream 70615 9206321 ~ 9232010 (+) True G41136
TU55386 lncRNA upstream 133891 9165009 ~ 9168734 (+) True G41131
TU55382 lncRNA upstream 138873 9131109 ~ 9163752 (+) True G41127
TU55516 lncRNA downstream 34933 9337848 ~ 9338218 (+) True G41240
TU55517 lncRNA downstream 47501 9350416 ~ 9350667 (+) True G41241
TU55518 lncRNA downstream 51603 9354518 ~ 9354794 (+) True G41242
TU55543 lncRNA downstream 300043 9602958 ~ 9603564 (+) True G41262
TU55547 lncRNA downstream 313965 9616880 ~ 9619553 (+) True G41265
XM_022669567.1 mRNA upstream 46728 9194186 ~ 9255897 (+) True ect2
XM_022669570.1 mRNA upstream 46728 9194187 ~ 9255897 (+) False ect2
XM_022669564.1 mRNA upstream 47644 9194185 ~ 9254981 (+) False ect2
XM_022669569.1 mRNA upstream 47644 9194186 ~ 9254981 (+) False ect2
XM_022669566.1 mRNA upstream 47644 9194186 ~ 9254981 (+) False ect2
XM_022669572.1 mRNA downstream 123254 9426169 ~ 9713508 (+) True LOC111192504
XM_022669571.1 mRNA downstream 227742 9530657 ~ 9713508 (+) False LOC111192504
XM_022669573.1 mRNA downstream 227742 9530657 ~ 9713507 (+) False LOC111192504
XM_022669574.1 mRNA downstream 227742 9530657 ~ 9713507 (+) False LOC111192504
XM_007237353.3 mRNA downstream 643277 9946192 ~ 9953281 (+) True LOC103039853
XR_001518717.2 other upstream 1475711 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2768951 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3991818 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 5167040 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6564408 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 692838 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 989422 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1452294 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2268311 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2451428 11754343 ~ 11757209 (+) False tmem221

Expression Profile