RNA id: TU55517


Basic Information

Item Value
RNA id TU55517
length 252
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G41241
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9350416 ~ 9350667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtggaaacttcacactagatctcaagcagtttggactgtgtgtctctccactcttcctccagactctgctcctttgatttcctttaaatgaaatgtaaaatttactgatgatcagtgatggtttaatggagagtcatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcacacaaaatctaacagcacttcatatcttacagcttccctctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55516 lncRNA upstream 12198 9337848 ~ 9338218 (+) True G41240
TU55511 lncRNA upstream 47501 9302625 ~ 9302915 (+) True G41235
TU55396 lncRNA upstream 69855 9251517 ~ 9280561 (+) True G41137
TU55398 lncRNA upstream 98358 9251517 ~ 9252058 (+) False G41137
TU55394 lncRNA upstream 118406 9206321 ~ 9232010 (+) True G41136
TU55518 lncRNA downstream 3851 9354518 ~ 9354794 (+) True G41242
TU55543 lncRNA downstream 252291 9602958 ~ 9603564 (+) True G41262
TU55547 lncRNA downstream 266213 9616880 ~ 9619553 (+) True G41265
TU55593 lncRNA downstream 385636 9736303 ~ 9736830 (+) True G41310
TU55612 lncRNA downstream 411799 9762466 ~ 9762867 (+) True G41328
XM_022669567.1 mRNA upstream 94519 9194186 ~ 9255897 (+) True ect2
XM_022669570.1 mRNA upstream 94519 9194187 ~ 9255897 (+) False ect2
XM_022669569.1 mRNA upstream 95435 9194186 ~ 9254981 (+) False ect2
XM_022669566.1 mRNA upstream 95435 9194186 ~ 9254981 (+) False ect2
XM_022669565.1 mRNA upstream 95441 9194185 ~ 9254975 (+) False ect2
XM_022669572.1 mRNA downstream 75502 9426169 ~ 9713508 (+) True LOC111192504
XM_022669571.1 mRNA downstream 179990 9530657 ~ 9713508 (+) False LOC111192504
XM_022669573.1 mRNA downstream 179990 9530657 ~ 9713507 (+) False LOC111192504
XM_022669574.1 mRNA downstream 179990 9530657 ~ 9713507 (+) False LOC111192504
XM_007237353.3 mRNA downstream 595525 9946192 ~ 9953281 (+) True LOC103039853
XR_001518717.2 other upstream 1523502 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2816742 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 4039609 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 5214831 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6612199 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 645086 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 941670 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1404542 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2220559 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2403676 11754343 ~ 11757209 (+) False tmem221

Expression Profile