RNA id: TU55518


Basic Information

Item Value
RNA id TU55518
length 277
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G41242
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9354518 ~ 9354794 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaatcttgaaaattgttagagcacttactcttggtcttgccatgtgggcagaaaatgtccttgtgatgtcacttcctttgtgccagtagacaaatatttttaactctttctctgcaggtaaaattccttatggtaacagggttgagcgcatgttgtgggacacaacttaatagcataaaaactgtaacatgcaaaacaatgtagaccaaagaagttgttttcataagtaaaggagatgcatatcaacaatacacaagaggaagtcatttatttaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55517 lncRNA upstream 3851 9350416 ~ 9350667 (+) True G41241
TU55516 lncRNA upstream 16300 9337848 ~ 9338218 (+) True G41240
TU55511 lncRNA upstream 51603 9302625 ~ 9302915 (+) True G41235
TU55396 lncRNA upstream 73957 9251517 ~ 9280561 (+) True G41137
TU55398 lncRNA upstream 102460 9251517 ~ 9252058 (+) False G41137
TU55543 lncRNA downstream 248164 9602958 ~ 9603564 (+) True G41262
TU55547 lncRNA downstream 262086 9616880 ~ 9619553 (+) True G41265
TU55593 lncRNA downstream 381509 9736303 ~ 9736830 (+) True G41310
TU55612 lncRNA downstream 407672 9762466 ~ 9762867 (+) True G41328
TU55618 lncRNA downstream 416746 9771540 ~ 9771771 (+) True G41334
XM_022669567.1 mRNA upstream 98621 9194186 ~ 9255897 (+) True ect2
XM_022669570.1 mRNA upstream 98621 9194187 ~ 9255897 (+) False ect2
XM_022669569.1 mRNA upstream 99537 9194186 ~ 9254981 (+) False ect2
XM_022669566.1 mRNA upstream 99537 9194186 ~ 9254981 (+) False ect2
XM_022669565.1 mRNA upstream 99543 9194185 ~ 9254975 (+) False ect2
XM_022669572.1 mRNA downstream 71375 9426169 ~ 9713508 (+) True LOC111192504
XM_022669571.1 mRNA downstream 175863 9530657 ~ 9713508 (+) False LOC111192504
XM_022669573.1 mRNA downstream 175863 9530657 ~ 9713507 (+) False LOC111192504
XM_022669574.1 mRNA downstream 175863 9530657 ~ 9713507 (+) False LOC111192504
XM_007237353.3 mRNA downstream 591398 9946192 ~ 9953281 (+) True LOC103039853
XR_001518717.2 other upstream 1527604 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2820844 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 4043711 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 5218933 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6616301 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 640959 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 937543 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1400415 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2216432 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2399549 11754343 ~ 11757209 (+) False tmem221

Expression Profile