RNA id: TU55547


Basic Information

Item Value
RNA id TU55547
length 1914
lncRNA type intronic
GC content 0.38
exon number 2
gene id G41265
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9616880 ~ 9619553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCcaatgattacctgttcagcagaaaaatggccatttgcatgctgttgtgttctatacctggcaaacctGAGTAACCTGAGCAAAAATCGTTCACAATTTTAAAGGAACAGTCAGTAATAAATGCGATGAGTGTGTAAAATATCTAAAGACGTTCCAATTTCCAAACATTGGATACAGTTTTCTGCTCCAACGAAAAAAAGACTCTATTATGCTATTGGtaaaattacccagctatggttagcaaaccttgctgaagctcagtgattacctgttcagcagaaaaatggCCATTTGTGTTCTGTTGTGTTCTATGGTTCtatgtggaaatgggactgggacTGAGAATGGTGGTGGGCTGATTCACAAGccacaacccacacagattaatTTAACATACAACACAGTTTAAATAAGAACATACTGACCTACAAGCCTAcactaaaatctttttttttttatattctgttttttaatttagcaACTTTAGCCCCAAATATCAACCTAATACAATTACACAatacagcttttttattttccatgccCTACCTCAAGGCATACTTATAGCTCTCCCTTCCATTTAGAGCAAAAATCGTTCACAATTTTAAAGgaacaattaataataaatgcgATGAGTGTGTAAAATAGCCCCAAAAGTCCCAATTTACAAACATTGGATAGAGTTTTCTGCTCCAACGAAAAAAGACTCTACTACACTAgtggtaaattacccagctatggttagcaaaccTTGCTGAAGCTcaatgattacctgttcagcagaaaaatagccagctcaccTGTTTCCTGTGTCCTTCAGCACACAGTTTCCATACTGTTGTTTTCTATACGTGGCaaacctgagtgtggaaatgggactgggacTGGGAATGGTGGTGGGTTGATTCAGAGGccacaacccacacagattactgCAACAGTGTGTAAAATGGCCAAAGAAGTTTTACGTTTTCTGCCCCACCCCTCCCTCCCCATATGCCAAGCTCACCCAAGTTACCAGATTGAAACACATGTGCAAGCAACGACAAGCCCTTGCTACCCTAGTTGTGGTagtaaattacccagctatgaATAGCAAACCttgctgaagctcagtgattacctgttcagcacaCGGTTTCCATACTGTTGTGTTCTTTACCTGGCaaacctgagtgtggaaatgggactttGGAGGCCACAACCCACACAGGTTACCATAGAATACAATGCACAGTTCCACTAAGAACATACTGACTAAAGTTCTGCTGTTAAGATCTGCCAGTtcttaaactcagcatgtttccttaatatctgatgatacatcttGATCATGTTATTAGTTACTATGGAAAATATCATCTTGGTAATAATGGtcttttaaagaaagaaaaacaagaaaataaaaagaaaatgaataaaacaaaatgaccCCAGAGAACAGGAACATTTCACtgtgtaaattttacatttacccAGTTGTCCCCATTAAATTAGGAAAAGTCATTGAATATGAAGACAATAAATGATATGAACTGCTAACTTAAAGGCTAAATTTAACATTGAATGGGTTCAAATTGACGCCAAAGAAAACAGAAGGGTTAAATTAAGTATGttgaaagcattttatttttatatgaaatCTGCATTTGGTACATGTTAACATTTAATTCCTTTTCATTCCTGTTCAGAAATGCGCATTTTTGGTCTGggtttatgatttatttatatattttgtaatattgtaaGTATGAAAGGGGAATTTattcactgtgtttatgtgtgagGGATCTCAGCAGGGGTGATGTAAGGCAGTATTCTGCAGTAGAATAGCTCGGTGTCATTTCCCCACTTAAGCTGTCAGCTGTGTTAACTGCGGGGACCTGATTAAGCAGGGTGCTGGCATTTACGAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55543 lncRNA upstream 13316 9602958 ~ 9603564 (+) True G41262
TU55518 lncRNA upstream 262086 9354518 ~ 9354794 (+) True G41242
TU55517 lncRNA upstream 266213 9350416 ~ 9350667 (+) True G41241
TU55516 lncRNA upstream 278662 9337848 ~ 9338218 (+) True G41240
TU55511 lncRNA upstream 313965 9302625 ~ 9302915 (+) True G41235
TU55593 lncRNA downstream 116750 9736303 ~ 9736830 (+) True G41310
TU55612 lncRNA downstream 142913 9762466 ~ 9762867 (+) True G41328
TU55618 lncRNA downstream 151987 9771540 ~ 9771771 (+) True G41334
TU55687 lncRNA downstream 255507 9875060 ~ 9875277 (+) True G41401
TU55696 lncRNA downstream 261502 9881055 ~ 9881290 (+) True G41410
XM_022669567.1 mRNA upstream 360983 9194186 ~ 9255897 (+) True ect2
XM_022669570.1 mRNA upstream 360983 9194187 ~ 9255897 (+) False ect2
XM_022669569.1 mRNA upstream 361899 9194186 ~ 9254981 (+) False ect2
XM_022669566.1 mRNA upstream 361899 9194186 ~ 9254981 (+) False ect2
XM_022669565.1 mRNA upstream 361905 9194185 ~ 9254975 (+) False ect2
XM_007237353.3 mRNA downstream 326639 9946192 ~ 9953281 (+) True LOC103039853
XM_022669576.1 mRNA downstream 339904 9959457 ~ 9968160 (+) True LOC103039038
XM_007237349.3 mRNA downstream 348858 9968411 ~ 9970748 (+) True c5h6orf120
XM_007237346.3 mRNA downstream 354000 9973553 ~ 9979584 (+) True mrpl4
XM_022669577.1 mRNA downstream 354261 9973814 ~ 9979580 (+) False mrpl4
XR_001518717.2 other upstream 1789966 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 3083206 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 4306073 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 5481295 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6878663 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 376200 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 672784 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1135656 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 1951673 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2134790 11754343 ~ 11757209 (+) False tmem221

Expression Profile