RNA id: XM_022670149.1


Basic Information

Item Value
RNA id XM_022670149.1
length 2858
RNA type mRNA
GC content 0.55
exon number 31
gene id LOC103037553
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9995709 ~ 10022964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGTTTTTAATGGTAACGAGCATCTCAGCAGACGCTTCGGCGGTCCAGCTCGGGAATATTGAGAGAAAATCCGCGGACCCAGAGAACAAACGGGATTTTACCTTCTCCAGGACCTCGGGGAGACCATGCTGCACCGCGGGGCTCTCCGCGCGACCCTGCTGGCGCTCCTACTGCACATCTGCTCCGCACAGAGGGGCCCGCCTGGTCCAAGAGGGCCACCCGGCCCCCCAGGACTTGTTGGCTTTTCTGGTGTTGATGGGATTGATggAGAACGGGGACCGGGGCCTGGTCCAGTTGGCCTCCCGGGCCCAGATGGAGCTAATGGGAAAAACGGGGCTAATGGACTCCCAGGGAATCCAGGAGCAGACGGTTTGACTGGGCCTGTTGGAGAACCTGGTCCAACTGGGCCTATTGGACCCAAAGGTGAGCCTGGAGCTCCCGGACCCAGAGGAAGACCTGGTGTGGGAGAGGATGGAGAAGCTGGTGCGGATGGAGAAGACGGGTTGCCAGGAGAACTGGGAAAAGCTGGACCCCCTGGGAGCCGTGGCCCAAGAGGATCGGTGGGTCTACCAGGACCATCTGGGTCGAGAggtCCCCCAGGCGTTTGGAACGGGGAGGAACTGTGTCCCAATGCCTGTGTTAGTGGACTGTCGGGATACAGTGGACTACCAGGCATGAAGggTCACAAAGGAGTGAAAGGTGAATCCGGTGAGCCAGGAAGACAAGGCCATAAGGGTACGCAGGGTCTGAGGGGAATAACCGGCATCATGGGGCCAAAAGGAGACCGGgGTCTACGAGGGACGGACGGCGACAAGGGTCCACAGGGCATCGTAGGCGCCCCTGGTGACCGAGGACAGAGAGGAAAAGTTGGCGAGGCTGGACCAAAAGGAGCTCAGGGTCCTCGGGGTCTTCAAGGTGTGACAGGTTTCCGTGGACCTAAAGGAGAAGCTGGTTTACCAGCCATGGATGCCCGTGATGGTATCCCAGGAATGCCAGGGGTTAAGGGAATTCCTGGAAAAGTGGGTTCTCCTGGTGATGTTGGTCCTCAAGGCCTGCCAggTGTGCCAGGAATACCAGGGGCAAAGGGCCACAGTGGGCCAAAGGGAAGCAGTGGTGATCCGGGCGTGGCAGGACCGATCGGGAACAACGGAAAAGTTGGTGAACGCGGTGAACAGGGCGAGGTGGGACCAGTAGGACCGAGAGGTGGGCCAggAGAACGTGGAGTAAGGGGTCCGGATGGCCCGCAGGGGCTGCCAGGTCAGAGGGGGCCTAAAGGAAATCTTGGACTACCTGGTCTACCAGGCCCGGCTGGATTCTCTGGTCAGAAAGGTGACAGGGGCGCAGTCGGACTCACTGGTCCAAAAGGCGAGCAGGGAGCACCAGGTGAGGAGGGAACCCCGGGCGATAAAGGAGATGTGGGTGATGAGGGAGAACCGGGCGAGAAAGGATCGACAGGAAAACCAGGTGATGCTGGAAACAAGGGCCCAGAGGGGGGCCGTGGGCAGCAGGGACTGGAGGGTCCACCTGGTGAGCCTGGGCCCCGAGGCATGCAGGGAGACCGTGGGGCACTCGGCTTACCTGGGGCACAAGGACGAGCGgGTCGTGGGCCGACTGACCAGCACATTAAGCAGGTCTGCATGAGAGTAATGCAAGAGCAACTCGCTCAGCTCGCAGCCAGCCTGACCAGGCCAGAGTCCGGAGTCACCGGCCTACAGGGCCCTCCTGGTCCTCCTGGACCCCCTGGATCTACTGGACAAAACGGCTTTCCAGGACATCCGGGAGCCAGAGGGCTGCCAGGGCTTAAAGGACCTCCTGGTCTGCTGGGAAGAAAAGGACCTAAAGGTGACACAGGAGACAGGGGAGACAGAGGACCGACAGAACAGGGGCCTAAAGGGGTACCTGGACCTCCAGGAATGCCAGGTGAGCCTGGACGGGCAGCGTATGGCAGCGAGGGTCGGGAAGGTATGCGAGGGCCTCGAGGTGTACCAGGAACGCCTGGAGTTCCAGGACCTCCTGGGCCTCCTGGCCCTAACGGATACTGCGAGTCCTCTCAGTGTGTTCTCCAGGCCGCTGCCGGAGTATCTGCCAAAGAGTCCAACATGAAGGGCCCAGACGACTATTAAAAGAACACATAATTATAGGCTGGCTGCAAACTGCCATCCAGAAGCTGCAGCCCATCACACACTCAGAGACTAATGGAGGAGCCTTCAGCAACTGTGACTTTTGTCTGTACAGCAGTTCTGTTCTCTGTAACGATAAACCAGGTACGATTCTTTGGCTTGCAGAAATGTGCATTTTGATAAATCGAGGACTGTTTACAGAAACGGACGACAGACGATTCCTGCTGACCCCTCAGTTCAGTTCTGAGAAATGCTCACACAAGTCTCAGTACATCTACTCTCAGGTTTCTGAAGCTGAAGTGTCAAATAAAACCAGATGCTGTCCTCCATACTAAACTCATGTATAGGGACATTAGTCCTAATGAAGGGTTTGTACATGATTTAAATGCATAGAACTAAATGTAAATACAGTGACCTCAAACTGCTCAAATACTTCATATTCTCATCTTCTACACTGCCTCATTTCCAACAATCCAAACTCAATGCAAATTTGTTACACTCAACTTCTTAATTACACTGACGCAGAAACTGTTTCACAGCGTTTTCTTCTGCGTGCTCATTTCTTTGCCCGATTTTCCCACTGATGAAGACGTTCTGCTATTGTGGAGTTACGTTTAATGTGTGTGGTTTGGTGAAATGAGAATTAGCTACAacttttctattatttattttataaaagagGTTCAATGTTACAGATACGATTGTGAAAAAGGGGTAAATAAAAGATTTTGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55722 lncRNA upstream 2487 9989714 ~ 9993222 (+) True G41436
TU55696 lncRNA upstream 114419 9881055 ~ 9881290 (+) True G41410
TU55687 lncRNA upstream 120432 9875060 ~ 9875277 (+) True G41401
TU55618 lncRNA upstream 223938 9771540 ~ 9771771 (+) True G41334
TU55612 lncRNA upstream 232842 9762466 ~ 9762867 (+) True G41328
TU55759 lncRNA downstream 61026 10083990 ~ 10088084 (+) True G41465
TU55775 lncRNA downstream 105588 10128552 ~ 10130745 (+) True G41477
TU55809 lncRNA downstream 195388 10218352 ~ 10226963 (+) True G41507
TU55814 lncRNA downstream 205887 10228851 ~ 10231948 (+) True G41511
XR_002649932.1 lncRNA downstream 280774 10303738 ~ 10329108 (+) True LOC107197699
XM_007237346.3 mRNA upstream 16125 9973553 ~ 9979584 (+) True mrpl4
XM_022669577.1 mRNA upstream 16129 9973814 ~ 9979580 (+) False mrpl4
XM_007237349.3 mRNA upstream 24961 9968411 ~ 9970748 (+) True c5h6orf120
XM_022669576.1 mRNA upstream 27549 9959457 ~ 9968160 (+) True LOC103039038
XM_007237353.3 mRNA upstream 42428 9946192 ~ 9953281 (+) True LOC103039853
XM_022669580.1 mRNA downstream 6693 10029657 ~ 10035243 (+) False lgsn
XM_022669578.1 mRNA downstream 8582 10031546 ~ 10035243 (+) True lgsn
XM_022669579.1 mRNA downstream 8646 10031610 ~ 10035243 (+) False lgsn
XM_007237334.3 mRNA downstream 258544 10281508 ~ 10289616 (+) True psmd14
XM_022669593.1 mRNA downstream 695776 10718740 ~ 10730389 (+) True LOC103033216
XR_001518717.2 other upstream 2168795 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 3462035 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 4684902 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 5860124 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 7257492 2735596 ~ 2738217 (+) False LOC103029230
trnar-ucg_1 other downstream 269373 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 732245 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 1548262 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 1731379 11754343 ~ 11757209 (+) False tmem221
trnaa-agc_12 other downstream 2090168 12113132 ~ 12113204 (+) True trnaa-agc_12

Expression Profile