RNA id: XR_002649932.1


Basic Information

Item Value
RNA id XR_002649932.1
length 1783
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id LOC107197699
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10303738 ~ 10329108 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacagggagagagagagagggagggatgaaGAGATGAAGGGATGGAAGGACCGATGATCCAGCCCTAAAGACGACGGACTGGCAGCACAGAGCGAAGACTGGCTGGCCTTCTGTTAAGTGTAGCTTAGAGCTGTTTTCCATGATTTcccagtgctggagataaaCTGGCAGCTTCTGCTCTTTCTGGATCTGACTGGATCTGTAAGAGTCTGGAAAAAGCTCCGGACTGATAAAGGGAAATGCTCGGTGCTGCTTTTAAccatgaagatgatgatgaaggtggtggaggtgtgtatgatgatgatgatgatgaagaagtgCTGAACATAGTCTCCATGGCCTCAAACACATGGAGCTTCGACATGTGCCTAACATACGACCACCTGCCCACCTCTCCGTCTGACCAGAACACAGAAGAGCACGGAGGACATAAAAAGTGCCTGTGTGAGCTGCTCCATTATGATTGCACTGTGAAAGGAGGTTGATGCTATCTTTGGTTATCTAGCTGTATGAGTGTTTCTATGCCGTCATAAAGCTAGATAACCGAAAGTAGGAACGGCCTCCTCTGCTGCAGGACAGCAGCACACGCGCACGTGCCCGGTGGAGCCCCTGTAAGATCACAGCTCCTCCCTGATGCAGCGTCTCTGTGAGAGACCGGAGGACCATTCACTGGAACAAAACCATCTGACCAGCCCGCACCCCCCACCCCATCCGACTCCCACCATCAACGGAAGCGTTTAGTGCCATGTGTGCCCCCAGAGAGGGGGCCGCGGGAAGggggagaaaaaagaagaagaagacgacgACAAGCAAGAGGCTGCAGCTTGTGTGCCAGTGGGGACAAAGAGGCTGCTGCCAGTTGCCACGGACCAccccctccaccctccacaaaccCCCAAGCCCACCCCCTCCACCCCCCAGATGCTGAAGATTGGAGCCCAGAACGAAAGGGTTGTGTGCGAGGAAGCCATCTTGATGGAGAAGCTGGCTGCCTGCTTCCTAAAATGGCTGTGTTGGCATGAGTGAGGTGGGGCGGATTTGGAAATTGCTGTTATAATATTAACAGAACCAAGTTGATGATACCCTGCTTCGCTGTGCAGTTCCATTGTTCCTGACCCAACGTCTTCCATCAGTTCCATCCGTTCCACACCTTCCATCAATTTGACCTGAATGAAGATGACTGGATTGGCCACCACAACCTGCTCAAACCTATTGGACAatcaaatgaactgaactgcagTGCAAGTACTATTAGAGGAATGACATAAGACGAATTTGAGCAAATCTTGGTACTTGAACCTAATGACAatctatataaaaacatatgcaTGCTTCAAGCTGCATATCGTTGTTCTACAAAGGCCAGGTGCGTTCAGACTGCAGAGCCCCGACCGACGAGAATGTGCCTTAATGTGTGAACTGTTTACAATGAAAGAGTAGTGTGCGGCTATTAATAGAGTAGACGATACTGTACAGTGAGTGCTAATGAACGTGTGAGTCATTTCTGTTCCgcttctgttttaaatgtgcttttaatGTCTCTCTGTGACTAAATGAACTGTACGTCCTCCCATGATGAACATTATATCCATTAAAACTTGTCTTTCCTGTGAGGGATCTCAAGTCATACAGGAAATGGTGCTCTTTGCTTAATAATCAGGATATTACTCGTATTACTCTGGCACGTGTTAAATACCCAAATGAGGAGCTGAAATCTCATTCTCTGTGTGTTAAACAGCAATGTATGAAATGGAATAAATAAAGGTGTGCAATATGAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55814 lncRNA upstream 71790 10228851 ~ 10231948 (+) True G41511
TU55809 lncRNA upstream 76775 10218352 ~ 10226963 (+) True G41507
TU55775 lncRNA upstream 172993 10128552 ~ 10130745 (+) True G41477
TU55759 lncRNA upstream 215654 10083990 ~ 10088084 (+) True G41465
TU55722 lncRNA upstream 310516 9989714 ~ 9993222 (+) True G41436
TU55943 lncRNA downstream 133782 10462890 ~ 10491901 (+) False G41597
TU55941 lncRNA downstream 161232 10490340 ~ 10491901 (+) True G41597
TU55953 lncRNA downstream 206657 10535765 ~ 10585949 (+) True G41604
TU56051 lncRNA downstream 535605 10864713 ~ 10864960 (+) True G41682
TU56053 lncRNA downstream 537876 10866984 ~ 10867501 (+) True G41684
XM_007237334.3 mRNA upstream 14122 10281508 ~ 10289616 (+) True psmd14
XM_022669580.1 mRNA upstream 268495 10029657 ~ 10035243 (+) False lgsn
XM_022669578.1 mRNA upstream 268495 10031546 ~ 10035243 (+) True lgsn
XM_022669579.1 mRNA upstream 268495 10031610 ~ 10035243 (+) False lgsn
XM_022670149.1 mRNA upstream 280774 9995709 ~ 10022964 (+) True LOC103037553
XM_022669593.1 mRNA downstream 389632 10718740 ~ 10730389 (+) True LOC103033216
XM_007252600.2 mRNA downstream 404186 10733294 ~ 10743346 (+) True LOC103033538
XM_007252603.3 mRNA downstream 427261 10756369 ~ 10861101 (+) True LOC103034920
XM_007252605.3 mRNA downstream 540514 10869622 ~ 10934882 (+) True LOC103035556
XM_007252618.2 mRNA downstream 821527 11150635 ~ 11157835 (+) True atp5d
trnar-ucg_1 other upstream 11329 10292337 ~ 10292409 (+) True trnar-ucg_1
TU55733 other upstream 298340 9995753 ~ 10005398 (+) False LOC103037553
XR_001518717.2 other upstream 2476824 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 3770064 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 4992931 5308546 ~ 5310807 (+) False snrpa1
trnam-cau_21 other downstream 426101 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 1242118 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 1425235 11754343 ~ 11757209 (+) False tmem221
trnaa-agc_12 other downstream 1784024 12113132 ~ 12113204 (+) True trnaa-agc_12
XR_002649936.1 other downstream 2005236 12334344 ~ 12340885 (+) True LOC103047294

Expression Profile