RNA id: TU56060


Basic Information

Item Value
RNA id TU56060
length 1897
lncRNA type inter_gene
GC content 0.45
exon number 8
gene id G41686
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10985208 ~ 11016077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAAGTGAAGAAGAGACTTGTTTAAGAAAGGCACAGAGCAATGCAGAGCATTATTACAATTTGGTCCGTATTACATGTGGAGTATTGGATGGCATCATGCACTGACTTCCAGTCTCTCTAGAGCTTTGCACCCATAGAGGTGTTTGATTTACACATGATATGTTTGGCAGTTTTATTTGGCATATTAAAAGTTTACTACTTTTGGTCCCTCAGTCTTGTTTTTTGCTGTAGGTTTAAAAatggaattaataaaaaaaagcccccccaaattataataataaaaagtacaataaaattCTTCAAATGCAACCTtcattcaacaaaaaaaaaatccattgattgaCCAGCAGATGGCAGACTATCTGACCACACCGTTCACTCAGCGAGTGTGAAAAATAAACTGCATGCAGGAAATTTGGATGTTTCACATATAATGTAaacacatctttaaaaaaaaaagccttttggtaaaaataaagggCACTTGGTGAGCACCTCAGCAGCCAACCATCACCGATCATCAAACACTGGGGGAGTTACAGAAGAGGGTAAAGTGACAAATGAAATATTATggacaaattaaattaatccTCTGTGAGGAAACAGGTTTGAATAGCGGGAGATATGGAATTATGCTGGATGTTCATGGAATGTTGTAAGATGAAACTTCGCCCATCCCCCCTTCATATGCTGTTCAGCTCTTGGAGCGTCTGGTCCAGGACTTGGTGCATTCCGAGGTTTTCTTCTTTGGCGCTTGCTAATTTTTCCTTCCAAGTCATCGATGGATTTTTCCAGTTTGGCCACTGTTCTCTCTGCAAACTCAGCGCGGGTCTCAGCCTATCAGACACAATAAAGAGGGAAGGTTGAAAAGGTTCAGTAGGTTCTAGTGCTCATATCATCTTCCTTATTTATatgaacaaaaaacacataCCTCCTTCAGTTTATCACTAAGGACCTTGATCTCCTCTTCAtatttgtcttctttttctgAGTAtttctctgcCTGAGCTTCTAAGGATTTGAGGTTGTTGGTTACGTTTTTCAGCTCCTCCTCCAGATCACTGGCCTTGCATTCGGACACCTCGGCTCTCTCCTCTGCTCGTTCCAGTTCACCCTCGAGAATCACAAGCTTACGGGCCAcCTCCTCATATTTTCGGTCAGCCTCCTCTGCGATGTGCTTGGCCTCCTTTAGCTGCATCTCCTGGATCTCCATTTTCTCCTCATCCTTCATGGCACGGTTCTCGATCACCTTCATTCCTCTCTCGCTCTCGTCTGCTGCTTTCTCTGCCTCCTCCAGTTTCTGCAGGGCAGTGGTCAGCCTCTCCTGGGCTCGGTCaagctcctcctccaccagctgGATCCTGCGGTTTAGCGCTGCCACATCACCTTCAGCATCAGCAGCTTTCTTTTCAGAAAGTTCCAGTTTCTCCTGAGCGTCTTTCAGGGCCTCAGAGTACTTGTCCAGTTCATCTTCAGTCTGCTTCAGCTTCTTCTGCAGGGCCATCAGCTCATCATCCAGCTGTTTGCATCTGTCCTCCGCTGCTTTCTGCTCCGTCTCGGCCTGCTCCGCCCTGTCGATGGCGTTCTCCTTGTCCAGCTTCAGCATCtgcatcttcttcttgatgGCCTCCATGGTGATAATTTGTGTTTTCAACTAGGTCAAGGAACTTAGCAAGTGTGAAGCAGATGCTGCAGTCTGTTTTCTCCTTCTTCAGGAAAGCGAGAAAGAACAGGAGAGCTGcaactaaagagagagagagaaagagaaagagagagagagaagtggagGAGAATGCAGCTGATGCGAACCCAAAGCCGAAGCTGACCACACTGCTGGATCTGACTGTACAGAACCCGACCAGAGTAAGTAGCCAGCTCCCAGCTCCCTCCCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56063 lncRNA upstream 116790 10868132 ~ 10868418 (+) True G41689
TU56053 lncRNA upstream 117707 10866984 ~ 10867501 (+) True G41684
TU56051 lncRNA upstream 120248 10864713 ~ 10864960 (+) True G41682
TU55953 lncRNA upstream 399259 10535765 ~ 10585949 (+) True G41604
TU55941 lncRNA upstream 493307 10490340 ~ 10491901 (+) True G41597
TU56120 lncRNA downstream 18697 11034774 ~ 11035067 (+) True G41731
TU56121 lncRNA downstream 26583 11042660 ~ 11043014 (+) True G41732
TU56204 lncRNA downstream 267160 11283237 ~ 11341114 (+) True G41802
TU56253 lncRNA downstream 653370 11669447 ~ 11709683 (+) True tmem161a
TU56250 lncRNA downstream 688114 11704191 ~ 11709683 (+) False tmem161a
XM_007252605.3 mRNA upstream 50326 10869622 ~ 10934882 (+) True LOC103035556
XM_007252603.3 mRNA upstream 124107 10756369 ~ 10861101 (+) True LOC103034920
XM_007252600.2 mRNA upstream 241862 10733294 ~ 10743346 (+) True LOC103033538
XM_022669593.1 mRNA upstream 254819 10718740 ~ 10730389 (+) True LOC103033216
XM_007237334.3 mRNA upstream 695592 10281508 ~ 10289616 (+) True psmd14
XM_007252618.2 mRNA downstream 134558 11150635 ~ 11157835 (+) True atp5d
XM_007252619.3 mRNA downstream 134588 11150665 ~ 11157835 (+) False atp5d
XM_007252620.3 mRNA downstream 160648 11176725 ~ 11201128 (+) True LOC103039314
XM_022669595.1 mRNA downstream 350188 11366265 ~ 11371720 (+) False LOC103039618
XM_007252622.3 mRNA downstream 351959 11368036 ~ 11373344 (+) False LOC103039618
trnam-cau_21 other upstream 229927 10755209 ~ 10755281 (+) True trnam-cau_21
trnar-ucg_1 other upstream 692799 10292337 ~ 10292409 (+) True trnar-ucg_1
TU55733 other upstream 979810 9995753 ~ 10005398 (+) False LOC103037553
XR_001518717.2 other upstream 3158294 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 4451534 6533365 ~ 6533674 (+) True G40756
TU56242 other downstream 555149 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 738266 11754343 ~ 11757209 (+) False tmem221
trnaa-agc_12 other downstream 1097055 12113132 ~ 12113204 (+) True trnaa-agc_12
XR_002649936.1 other downstream 1318267 12334344 ~ 12340885 (+) True LOC103047294
XR_002649937.1 other downstream 1320441 12336518 ~ 12340885 (+) False LOC103047294

Expression Profile