RNA id: TU56429


Basic Information

Item Value
RNA id TU56429
length 428
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G41954
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12285553 ~ 12285980 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gccaatttacacagccaattacctaacccactcattaggactcctatcactagtgatgcaccaacaccaggaggatgaagactagcacacccCTAGTCAGCCACcgtctctttttaaactgctgatgcagcattaccgagtagcatcacagcacgctcagaggaaagtgcagtgactcggttctgatacatcagctcactgaCGCCTcatgctgcagacatcaccctttggaacgattaggggagagagcaccatctactcacccagaaaagagcaaggccaattgtgctctctcagggcccTCGGAGCCCCCTCATTTCAACCATTTAACCAGGATTTgattaattataaaatgtagCTTGATTCTTGTCTGACCCACAATTATGGATGCAGGGCAGTCTAAATAAACTCCTGAGTCTGGACTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56373 lncRNA upstream 164123 12118432 ~ 12121430 (+) True G41906
TU56262 lncRNA upstream 563749 11721332 ~ 11721804 (+) True G41842
TU56261 lncRNA upstream 564558 11720121 ~ 11720995 (+) True G41841
TU56259 lncRNA upstream 567077 11717135 ~ 11718476 (+) True G41839
TU56253 lncRNA upstream 575870 11669447 ~ 11709683 (+) True tmem161a
TU56441 lncRNA downstream 41915 12327895 ~ 12328238 (+) True G41961
XR_002649938.1 lncRNA downstream 146047 12432027 ~ 12437339 (+) True LOC107197698
XR_001518718.2 lncRNA downstream 146427 12432407 ~ 12437339 (+) False LOC107197698
TU56463 lncRNA downstream 168515 12454495 ~ 12456795 (+) True G41975
TU56592 lncRNA downstream 348482 12634462 ~ 12634735 (+) True G42070
XM_007252647.3 mRNA upstream 334 12248637 ~ 12285219 (+) False LOC103046586
XM_007252645.3 mRNA upstream 334 12257415 ~ 12285219 (+) True LOC103046586
XM_007252641.3 mRNA upstream 45147 12145212 ~ 12240406 (+) True LOC103045466
XM_022669612.1 mRNA upstream 45147 12183647 ~ 12240406 (+) False LOC103045466
XM_007252642.3 mRNA upstream 45147 12200296 ~ 12240406 (+) False LOC103045466
XM_007252644.3 mRNA downstream 1937 12287917 ~ 12323072 (+) False LOC103046074
XM_007252643.3 mRNA downstream 2191 12288171 ~ 12323072 (+) True LOC103046074
XM_022669613.1 mRNA downstream 55634 12341614 ~ 12384922 (+) False LOC103021640
XM_022669614.1 mRNA downstream 55636 12341616 ~ 12388429 (+) True LOC103021640
XM_022669615.1 mRNA downstream 55636 12341616 ~ 12388429 (+) False LOC103021640
trnaa-agc_12 other upstream 172349 12113132 ~ 12113204 (+) True trnaa-agc_12
TU56269 other upstream 528344 11754343 ~ 11757209 (+) False tmem221
TU56242 other upstream 705224 11571226 ~ 11580329 (+) True G41828
trnam-cau_21 other upstream 1530272 10755209 ~ 10755281 (+) True trnam-cau_21
trnar-ucg_1 other upstream 1993144 10292337 ~ 10292409 (+) True trnar-ucg_1
XR_002649936.1 other downstream 48364 12334344 ~ 12340885 (+) True LOC103047294
XR_002649937.1 other downstream 50538 12336518 ~ 12340885 (+) False LOC103047294
TU56432 other downstream 50562 12336542 ~ 12340913 (+) False LOC103047294
TU56588 other downstream 346836 12632816 ~ 12633429 (+) True G42068
TU56657 other downstream 419579 12705559 ~ 12715028 (+) True G42096

Expression Profile