RNA id: TU56657


Basic Information

Item Value
RNA id TU56657
length 1436
RNA type TUCP
GC content 0.48
exon number 13
gene id G42096
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12705559 ~ 12715028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTGGGTTCCAAGTTTCTGAAGCATCTTCAGGTATTGGAACACCAAGTGGACGATCTGGGAGACGTTCTGGTAACCCTCATCAGTCAGGGTGATGGAAATGCTGAAGATGGAGTAGGTGGTGTTCTGGTCAAAACCTGTCTCACTATTTCCTCCAAACAGAGCCAGAGCccaacacTTCTTTCTGAGCACGGAGAGAATACTGCCAGCACCCTCGTGGCCAATCAGCCAGGATATGTAGTGCAAAGGCTTGACTCTGTAATGTTTGTCCTGAGGAGGTAAAGCCCAGCTGATGGTGAGAGCGTGGATTTTTCTCACAGGAACCACTCTGTAAAGTTTGTTGAAATCTGGTGTATTAAACGGGTCCTGAAGGTTTGAAAAATCAGGCCGAGGCTGACCATTGTTGGGGACCTTGATGAAGATCTCCCTCACCCATTCCTCTAAAGTGTCCAGAGTCTCTCTGGATTGAACAGTGAGGGTCATGTAATGTGCAGAGTAGTATCTCTTCCAGAATTCCCGCAGACGCTCATAagtatttatcttattttcctTTGGTTCGTGCTTCAGAGTTTGGGCATTTCCCCAGCAGAACTTAGTCATTGGGTGGTTGGGCTTTGCAAGGCTTCCAAAAAGCATTTCTTTGCGATGGGAGTCTGACGGTCTGGCTAACTGGTATTCACTATCAACGGCTTCCACCTCCCTGTCAATAGCGTCCTCTATCATCAGAGGACAGATGAAGAACTGTGCCCACCTATCCAGAGCCTCTCTGAAGTACTTCCTCTGAACATCAAACTGAAAGATGGTCCTCTCGCAGTCTGTAGAAGCATTGTCACTGCCCCCGTGTTTCTTCAGAAATGCATCAAAACCATTTTCAGCTGGGTACTTCTCACTGCCCATGAACACCATGTGCTCAAGGAAGTGGGCCAGACCAGGCAGATCCTCAGGATCACTGAAGCTtcccacacagatacacagagcAGCTGCTGACTGTTTCTCTGAGCTTGCCTTCTTTTTCGTCCTTACTTCACAGCTCTCATCAGAGCCCTTACTATCCTCACCATGTTCACTGCTGTCATGTTCCTCTTCCTCAGAACTCCCACCCTCCTCTTCATCTTCCTCACTGTCATCCTTTTCAGCTTCTTCTGTTCCTGGCTGCTCAGAGTTATTTGTGCTGTGCTCTCGGCTCTGGTCTGAGATGAGCAGTGCTTTCAGTCCATTGTTGAGCTCAATGTACCTGTACTTCTTTGGGTCACTGGGTGATTTGATTATCTGCAGGTCCTCAAGCTCTTTTTCTGCTGCCTCTACATTGTCCCCAGAGGTCAGTGAAGCTCTTGGCTCTGGCGTTGGTGGTGGCTCCCCCACTGTCAGGCACAGCTGCTTGAACTGTTCCACTGGagaaattagatttatttttctgaGGCATGTCTGGAGGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56642 lncRNA upstream 12806 12687525 ~ 12692753 (+) True G42091
TU56592 lncRNA upstream 70824 12634462 ~ 12634735 (+) True G42070
TU56463 lncRNA upstream 248764 12454495 ~ 12456795 (+) True G41975
XR_002649938.1 lncRNA upstream 268220 12432027 ~ 12437339 (+) True LOC107197698
XR_001518718.2 lncRNA upstream 268220 12432407 ~ 12437339 (+) False LOC107197698
TU56670 lncRNA downstream 27113 12742141 ~ 12744624 (+) False G42103
TU56668 lncRNA downstream 28693 12743721 ~ 12744624 (+) True G42103
TU56757 lncRNA downstream 133535 12848563 ~ 12859161 (+) True G42154
TU56783 lncRNA downstream 424761 13139789 ~ 13140167 (+) True G42178
TU56798 lncRNA downstream 541407 13256435 ~ 13284550 (+) True G42181
XM_007240069.2 mRNA upstream 48445 12649751 ~ 12657114 (+) True LOC103025446
XM_007252651.3 mRNA upstream 275713 12420587 ~ 12429846 (+) True hnrnpm
XM_007252652.3 mRNA upstream 275721 12420587 ~ 12429838 (+) False hnrnpm
XM_015606703.2 mRNA upstream 275721 12422716 ~ 12429838 (+) False hnrnpm
XM_015606707.2 mRNA upstream 285916 12407546 ~ 12419643 (+) True march2
XM_015603325.2 mRNA downstream 145106 12860134 ~ 13094617 (+) True nfia
XM_022669621.1 mRNA downstream 145109 12860137 ~ 13094617 (+) False nfia
XM_022669622.1 mRNA downstream 145114 12860142 ~ 13094617 (+) False nfia
XM_007240078.3 mRNA downstream 145117 12860145 ~ 13094617 (+) False nfia
XM_015603326.2 mRNA downstream 192068 12907096 ~ 13094617 (+) False nfia
TU56588 other upstream 72130 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 364646 12336542 ~ 12340913 (+) False LOC103047294
XR_002649936.1 other upstream 364674 12334344 ~ 12340885 (+) True LOC103047294
XR_002649937.1 other upstream 364674 12336518 ~ 12340885 (+) False LOC103047294
trnaa-agc_12 other upstream 592355 12113132 ~ 12113204 (+) True trnaa-agc_12
TU56827 other downstream 733564 13448592 ~ 13450477 (+) True G42208
XR_002649939.1 other downstream 902055 13617083 ~ 13622042 (+) False LOC103034435
TU57395 other downstream 2180034 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 3263541 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 3264402 15979430 ~ 15984632 (+) True LOC103036127

Expression Profile