RNA id: XM_007240106.3


Basic Information

Item Value
RNA id XM_007240106.3
length 2574
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC103037142
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13810833 ~ 13857361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTGAAATGAATCAGGCAGTTTTAATCTTTCTCATTTGTGGATATGAAGTGTTTCAGCATGCTTCCAGCTTTAAGTTTCACTCTGGCTGTGCTTCTGCCACTTGCAGCTGCTCTGCAGATTGACCTCACTCCAAAGAAGGCCCTGTTTAAAGTTGGAGACAGGGAGGAGCTGAAGTGCAGCGTGACCGAATGTCCAGGAGAAGTGAAATTCTCATGGATCGCTCTGGAAGACAAACCTCTCTATGCTGTATTCAAGTATTTATCTAAAGAGTCAGTTATGATTTTCAACAGCGTGACCAAACACCATGCAAACAAAATCAAGTGCACGGCTACGTGCCAGGATGTGTCCAAACAGGCCACGGCCACAGTGGAGGTCTACTCTTTTGCGAGGGACCCAGTCATCTCCGGACACGACAGCTTAGTTCCAGGAGTGGAGAACACCTTGACCTGTGAGATCACTGAGGTCCATCCAGCAGAGTATATGGAGGTTGAGTGGATGCGTGGGGGAACTGTGGTGCACAGACAGGACGGGAAGCATGGAGTCCAGACAGTCCAATCCCATTACACTTTTACACCACAGAGAGAGGACGATGGAGCGCAGATAACCTGCCGGGCCTCACTCACGCTACCTGATCTACCGCCGGATCAGCAAACCAGAGAGACCACTGTTTCCATTGTAATTCTATctgcTCCAGAAACCGTGGAAGTGTCCGGGTCCAGCACAGTTAGAGTCGGCTCTGCTCTCAGTCTGTCCTGCAAGGCGGACGGCAATCCGACCCCATTGTTCTCCTGGAGGGTTTTGAGGCCTGATGGTCAGTGGGTTAAAGTGGCAGAGACACGGCAGCTCTCTCTGATTAACGTGTCTCTGGCGGATGCTGGAGAATACGAGTGTGAGGCCAGCAACGGGGTCGGGAGAAAGACGGCCACTGTGACCGTCGCAGTTCACGGTCCTCCTACAAACACTGTGATTTCTCTGTCGACCAATGAGCCCAAAGAAGACGAGCTCGTGTCCATCTCCTGCACGAGCCACAGCGTTCCTCAGAGCCGTCTGGTACTGAGTAAGCTGCTAGATGGGGGGGAGTCTGAGCTGGCGTCTGGAGAAGGGCCTCACACCTCCGTATCGTACAGCTCTGCCCGAGCCAACAACTCAGGCCTGTACGTCTGCACAGCTTTCAATGACTACGGCAGCCAGAAGGCCAGCGTCCAGCTTACCGTTCAAACTTACCCCCTGGAGGTGACCATGCATCCAGACGTGAGTGTGATCACACTGGAGCGAGGGTCATCACTCTCGCTGTCCTGCGAAGCCTCGGGGTGTCCTCACCCACTCTTCACCTGGACGGGTCTGCAGGATAAGCCACAGTACAGACAGAACAACAGCCAGACAGATATCTCCCAGCTGAACTTGGAGTCTGTAGAGCCGGATGATGAGGGAGCTTTTATCTGTGAGGTCAAGTGTGGATCTGTGGTGAAGTCCAAACAGACAGAGGTGAAGGTTTTCTCATTTACCTCAGATCCTACCATTGAAAGTTCTGGATATTCTCTGGAGGGTGAGATGACCAGTCTGATCTGTGTGGTTCGCGACGTGTTTCCAGCCAAGCTTTTCCGTATACAGTGGCTGGATGGAGAGAAGGAACTGCCCTCAGAGACCTTTGTGGATGGACTGCAGAACCTCAGCTCCATCATCTTCTATCAACCGCAGAGCAGCGTTCAAGATACGACTATTACATGTAAGGTTTCACTACAGATGGATGGAGTACCAGCTGCGCTTACAGAGAAGACGACATCTGTCACCTTGGCAAGGCACTACACCCCCAGACAGACCACCATCACTGTGAGTCCACAGGAGGAGCTGAAGGCAGGGGAAACGCTCAGCATCTCCTGCCTGACAGATAGTGCTCCAGAGGGGCATGTGTTTTTGAAGAAGGTGGTGGATGGTGAAGAGACGAAGCTAGCATCCAGTCAGGGCACTCGGACCTCTTTCACCATCCCTGCTGCCGAGCTCTCTGATTCTGGGGTCTATGTGTGTGAAGCTGTCAATCAATACGGCAGTAAGAATGCCAGCGCCCAGATTACTGTGCAAGCTCCTCCCAGGAACACTTCAGTGAAGGTAATCCCATCCGCATGGGTGCAGGAAGGCCAGAACATCACTATCTGCTGCAATTCAGTCAGCTTCCCTCCTCCTGCCATCATTCTGAGGAAGTTGGACAGTGGGGTCGATATCTACTCCCCCAACGGCACTTTTGTGCTGGTCAACCTCACACCAAATGACACAGGGCTTTACCAAGTCAACGTCACAAATGCCCTGGGCTACGAGACTGAGGTCTTCACTATTCATGTGATGGAACTCCACACGGCCAGCCCTCCACCCCACTGGAACTATTTTATTATTCCATTAGCTGGCTTGGGAATTCTGGCCTCAGCCGCTGTGGTGCTGGAGTACCTGCGGAGACAGCGGCTAAAGGGTTTCTACGAACTGAGCAAGAGCAAACCAGGCACAGCGTAAACGACACAGAAATGTTAGACCCTACTGAACTGAATCAGTCTCTGCTGAACTGCGTTAGAAATGAATCAGA

Function

GO: NA

KEGG:

id description
K06527 VCAM1, CD106; vascular cell adhesion molecule 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56848 lncRNA upstream 274807 13530352 ~ 13536026 (+) True G42220
TU56835 lncRNA upstream 293152 13509024 ~ 13517681 (+) False LOC103032215
TU56836 lncRNA upstream 293152 13509061 ~ 13517681 (+) False LOC103032215
TU56828 lncRNA upstream 334997 13472627 ~ 13475836 (+) True G42209
TU56814 lncRNA upstream 439028 13369304 ~ 13371805 (+) True G42195
TU57070 lncRNA downstream 161660 13998920 ~ 14002697 (+) True G42389
TU57067 lncRNA downstream 184383 14021643 ~ 14025396 (+) True G42386
TU57143 lncRNA downstream 219338 14056598 ~ 14073336 (+) True G42442
TU57145 lncRNA downstream 219338 14056598 ~ 14061591 (+) False G42442
TU57157 lncRNA downstream 233163 14070423 ~ 14134414 (+) True eps15l1
XM_007240105.3 mRNA upstream 5727 13801468 ~ 13805106 (+) True gpr88
XM_022669636.1 mRNA upstream 17114 13710046 ~ 13793719 (+) False cdc14a
XM_007240108.3 mRNA downstream 24457 13861717 ~ 13891132 (+) True slc30a7
XM_007240109.3 mRNA downstream 143931 13981191 ~ 13984481 (+) True s1pr1
XM_007240110.3 mRNA downstream 152580 13989840 ~ 13998425 (+) True zbtb37
XM_022669647.1 mRNA downstream 237484 14074744 ~ 14129395 (+) False eps15l1
XM_022669648.1 mRNA downstream 237485 14074745 ~ 14129395 (+) False eps15l1
XR_002649939.1 other upstream 188791 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 360356 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 1095805 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 1177404 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 1469920 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 1057802 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 2141309 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 2142170 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 3356278 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 4174913 18012173 ~ 18014499 (+) True G43537

Expression Profile