RNA id: TU57161


Basic Information

Item Value
RNA id TU57161
length 2209
lncRNA type sense_over
GC content 0.37
exon number 2
gene id eps15l1
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14070423 ~ 14134546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttagtgagcagatttaaaagcttttttgcGGAGCCTCTCTATACTTCATGTTAGTTATAAATTCGCCAGTTACTTTGCCAGGTCCTGTAATGAATTCTAACCTTCTGCCAGAAACCAACTTCTCGTCACATACACGGCCTTTTCCcctgcagcagaatgagtgtaaaagattctccttaaatgtcttttatttttgtttttaaataagggttaatctataatctataaataaataaataaattccaagTCTaagcatttactgtatttttcgcactataaggcgcactagattataaggcatactattagggtgatattagctagcagtttgtcccaaatagcttgttttaacactgtaaacacgcaggctacagtccgataatactcacctctgaatgacgaagaagctagctcggttagcggctaatgctaatactaatactgctccagcagtgctagccagggttagcagcaaacTACAAGCTGATATACTCGCCTataaatggtgaaagagctagcgcttagcgttgttagcggctaatgctaatacggctccagcagtgctagccagggttagcagcaggctgcaggctgataatactcacctgtgAATTGTAAATATGCTAGCGCTTagagcagctaatgctaatactactggagagctaaactgaaactcctgtataatgctgtactttagcggagtggctttactgctccttataacctgactgatagaatttatacataaggatcTTAAGTGCGCCTTCTGGTGTGAAAAATGTTATATGTccatactgctgtgtgatgAACCTTCATGCCACGGGGGgtcagatttcagcacaacaccacctGTTATAGTTTGAAGACTGACTTAATTGAATTTCAAAATGCTCTTCAGTGGAACTGCTCTGTTCTGTCTGTATTCACAGGTTTTCAGAGAATCTGCACAAATACATTGGCTTGAAAAGTATTCAAACCCCTCAAACCTTTTCAAACCaaattttgtcaccttacaaccacaaatcgTTCAAGAAGTTTAATAGAATTTAGGACAGGACTTTGACTGGTTCATTCCAACACACGtttaatattctttgatctaaaccattcattgcactgtagctctggctgtatgtttagggtcattgtcttgctggaaggtgaatctccttcccattCTCAAGTGTTTTGCAGcatccaacaggttttcttccaggattgccctggttttttttttttttttaaaagattgcttaatataattttaacagTGTTACTTTACTACTTCACTTTATTGACTTTGAACCCCCAGGAACACGCTGGGCTCGTTTTCTGgtctaccaccctgttacaggTCTCCCTCTACTAAAAGCACTGCAAAGGTCGTGACTAAGCTTAAATCGTGTGCAGAAATCCTTCTAATCAAtaagtcaatataaaatattaaattgttttcTCGTGTCGGAAGAACAGTTTCCGAGTTTCGGCTCAtgcttaaaacattttcaaacgtCTCACAGGTGTCAACACATGCTGTACTCGTCTCTGATACCTCCAttgtgcaataataataatagtttatgtatatttttatttgtgtgttaaaaaaaattgtctgtaAATCCATTTAGACTCGTTACATCCACTTTTGATGTtctgttattgttttattctttgtttttgtatgtAAGCATTTTTAAATTGCCTGTCTTCGTATTAAACATGACATATGCATCGAGATAAATAACCCAGAGTTCTGAAGTGGAGCGCGTTCCTTTCGGCCTGCCTTAGTCCCTCGCCTCTGTAGATAAGAACAGAAGAactacaacagaaaaaaaagaaaaacaataatgatTAATCGTCATActgaaatgcatttttaaaaagcaaagtacatgtaaaatgtatattacaTCTGCTCTATTTGTcctataaaacatgaataacTCCAGATGTGTaactgaaaacattttaaagattgCATTGAACATTGGTAGTCACTAGAAAAAAATGCCAATGCTGAGTATGTGGTTCCTTGTTTCATAGAATAAAATACACCATTTCAGATATGAAAATGTGTCCCttactcattattttgagtGTTTTGTTGTGGTTTATTGGTGACTGAACTGATCTGAGTGTGACGCTTGATACTAATAGGCAAATTAAGCTTTGTTTAGCCTTTTTTACAGCCTCTATCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57143 lncRNA upstream 52358 14056598 ~ 14073336 (+) True G42442
TU57145 lncRNA upstream 64103 14056598 ~ 14061591 (+) False G42442
TU57067 lncRNA upstream 100298 14021643 ~ 14025396 (+) True G42386
TU57070 lncRNA upstream 122997 13998920 ~ 14002697 (+) True G42389
TU57055 lncRNA upstream 268333 13836172 ~ 13857361 (+) False LOC103037142
TU57189 lncRNA downstream 25859 14160405 ~ 14160711 (+) True G42469
TU57219 lncRNA downstream 168872 14303418 ~ 14306941 (+) False G42496
TU57216 lncRNA downstream 168995 14303541 ~ 14306087 (+) True G42496
TU57265 lncRNA downstream 242932 14377478 ~ 14378030 (+) True G42527
TU57259 lncRNA downstream 277743 14412289 ~ 14413746 (+) True G42521
XM_007240110.3 mRNA upstream 127269 13989840 ~ 13998425 (+) True zbtb37
XM_007240109.3 mRNA upstream 141213 13981191 ~ 13984481 (+) True s1pr1
XM_007240108.3 mRNA upstream 234562 13861717 ~ 13891132 (+) True slc30a7
XM_007240106.3 mRNA upstream 288434 13810833 ~ 13837260 (+) True LOC103037142
XM_007240105.3 mRNA upstream 320588 13801468 ~ 13805106 (+) True gpr88
XM_007240118.3 mRNA downstream 172177 14306723 ~ 14309631 (+) True mrpl54
XM_007240119.3 mRNA downstream 172184 14306730 ~ 14309631 (+) False mrpl54
XM_007240117.3 mRNA downstream 177952 14312498 ~ 14333039 (+) True LOC103040508
XM_007240122.3 mRNA downstream 199549 14334095 ~ 14345180 (+) True LOC103042131
XM_007240123.3 mRNA downstream 199549 14334095 ~ 14345180 (+) False LOC103042131
XR_002649939.1 other upstream 503652 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 675217 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 1410666 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 1492265 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 1784781 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 760516 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1844023 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1844884 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 3058992 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3877627 18012173 ~ 18014499 (+) True G43537

Expression Profile