RNA id: TU57342


Basic Information

Item Value
RNA id TU57342
length 1518
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G42579
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14741274 ~ 14749183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagacaaaagcaaaagacaaaaacaaaggaCTCTACACTAACAAATTTTAGCCCTTTCAACCAGCACTCACATTTAACCAAATAATCCTGTCTGCCCCTTCCTCAACTGGGCCATACCATTACTACAGGgtgtaaggagtaaggagtcCCCCCCCATCTTGTAGCACATCCGGAGCTCCCAGGATACTACAAGAAGGGGAGTTAACATGGCCGCCATTCCCCAGGAAGCCCCCCAAGGACAACAACAAGgattttacagcTCACCTTTTCCCACCCAATGATGCACTGGAATGAACCCACATGAGAATGAGAATAATGCCACCTAGTGGCTAAACAGCGCACATGCATATAAAGTGGAGACAACTTTCCCGTCCACCAGCTCCTCCACAATGACCTTCACTCGCCTCTGAACAAGCCTCCTGTACTCAGCGATCTCCAGCTCCAGCCTCATCTTGATGTCCAGCAGCAGCTCGTACTCGGTGGCCTGCTGCTGTATGTTGACGTTGATCTGCCGGAGTTCCTCCTGCAGGCGGTCTATGTGTGTCTGCAGCTGAGTCAGCTGGACGCTGTAGCGCATCCCCACATCAGCCACGTTCTTCTCCAGGACTTGTTTCTGTACCATAAATGGAGAGGTGAGGAAAGGGTTAATACACAGTAATTAAATCATTGTTCGTATAAATGTACAGTCATCCAAATCAGAGTTTTGagttctttataaaaaaaaaactgaggctGTAGGAGAACTGAAACCACAGTCCATGTTTCTGAACCCTGATCCTGGAGGCCCACCCCCAGCAATCGTATTAGTTTCCCTGATCCCAGCACTAACTGAATTTATTGTCTGattaacagtttattattatatatattagttaaaaAGGGTAACACATATTTATAGGGGGAGTGGGGGGTATTTATATAGGTTCTCTGTTGCATGCAAATCATTCACAATGTCctggaaaacagaaaacagtcaTGGATGCTTATACAATTTTTGGGAACAATCAGTGATGACAGAGCGTGTGAATGAGTGACATATGCAGCAATACTGTGACACACAGAGATCATCCTGATTGGTCTGTATGGCTGTTTAGACCCGTCAGTGTGCTCTGTAGGCAGAATTTACATCCTGACTGGTCTGTCTTTGTGTTCACAAGACCCATAATTGTCCTTGGTGGACGGGCTTTTTACTCAATATATAGGTCTCTCTTCCTATGTCAGGGTATCTTTTTAGTGTAGCTCTGCAGCTCCATGGCAGAAAGTGGACCTTGAGGACCGGAGttcagaaacactgctgtagtccactgtagggctgcaacgattaatcTGACAATTGTTTTTCGATTAGATGATTAATCGCCATTGTTTTTATCATGCCCACCATTTGTGTTTCCTACTGGTGAGGCTTTCGATCCAGCGCTTGACTTACtgaaaacttaattttttttttaataatgaaaattgCCATTAAGTctgtattattgtttattatttatttattagtatttacttCTTTCA

Function

GO:

id name namespace
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57357 lncRNA upstream 7989 14728460 ~ 14733285 (+) True G42583
TU57352 lncRNA upstream 8323 14728460 ~ 14732951 (+) False G42583
TU57326 lncRNA upstream 52521 14685299 ~ 14688753 (+) True G42571
TU57314 lncRNA upstream 71991 14627857 ~ 14669283 (+) True G42564
TU57289 lncRNA upstream 180958 14538385 ~ 14560316 (+) False LOC111192557
TU57365 lncRNA downstream 16523 14765706 ~ 14768714 (+) True G42590
TU57374 lncRNA downstream 121173 14870356 ~ 14876200 (+) False G42599
TU57379 lncRNA downstream 121173 14870356 ~ 14874073 (+) False G42599
TU57380 lncRNA downstream 121173 14870356 ~ 14877360 (+) True G42599
TU57381 lncRNA downstream 129836 14879019 ~ 14881077 (+) True G42600
XM_022669679.1 mRNA upstream 15317 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 16636 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA upstream 16671 14711374 ~ 14724603 (+) False LOC103026778
XM_007240250.3 mRNA upstream 81249 14622178 ~ 14660025 (+) True LOC103026177
XM_007240131.3 mRNA upstream 207104 14483941 ~ 14534170 (+) True LOC103044493
XM_007240135.3 mRNA downstream 85041 14834224 ~ 14868739 (+) True LOC103045821
XM_007240145.3 mRNA downstream 223078 14972261 ~ 14994616 (+) True LOC103022023
XM_007240152.3 mRNA downstream 296091 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 296424 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 296555 15045738 ~ 15051775 (+) False LOC103023991
XR_002649939.1 other upstream 1119232 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1290797 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2026246 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2107845 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2400361 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 145879 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1229386 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1230247 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2444355 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3262990 18012173 ~ 18014499 (+) True G43537

Expression Profile